Dear Colleague, We are pleased to announce release 2.0 of LiMB, (LIsting of Molecular Biology databases). LiMB contains information about the contents of databases related to molecular biology as well as the details of how they are maintained. It was created to facilitate the process of locating and accessing data sets upon which the research community depends; we believe it will also be of use to those who are doing research in designing and linking these databases. The data in LiMB were gathered from questionnaires and journals. Release 2.0 contains 18 new entries not listed in release 1.2. In addition most of the original entries from releases 1.0 and 1.2 have been updated from questionnaires completed by the staff of the database in question. The data in a LiMB entry are divided into 53 fields or linetypes, (the computer - readable versions of the database are distributed as flat files). The first LiMB entry contains definitions for the data contained in these various fields. Standardized vocabularies have been used where possible (e.g., in the data.pri, data.sec and source lines) to facilitate computer-assisted searches and index- building. The first field in each entry provides a "name" for that entry, usually based on the common acronym/abbreviation for the described database. If you are having problems finding a particular entry using the name with which you are familiar, you should consult the name.now, name.alt and name.bad fields. We have no objections to your using these data for your own purposes or redistributing it. We do request that if you redistribute it or use it in any public forum that you credit our group. (The appropriate formal citation would be: Lawton, J.R., Martinez, F.A., and Burks, C. (1989) `Overview of the LiMB Database'. 17, 5885-5899). If you do redistribute LiMB, we also request that you include a copy of this cover letter with it. Additional copies of LiMB in hardcopy, PC floppy disk or via electronic mail are available upon request. We would greatly appreciate any ideas for improving future releases. We also apologize in advance for any factual errors that appear in the database, and would be grateful if you would inform us of any errors you find. If you know of any molecular biology or related databases not listed here, please inform us so that we may take steps to have them included in the next release. Sincerely yours, Christian Burks, Ph.D. Principal Investigator Gifford Keen Database Manager e-mail: limb%life@lanl.gov telephone: (505) 667-9455 postal address: LiMB T-10, Mail Stop K710 Los Alamos National Laboratory Los Alamos NM 87545 U.S.A. ********* LiMB 2.0 Brief Listing ********** entry AANSPII name.now Amino Acid and Nucleotide Sequences of Proteins of Immunological Interest charter ANSPII's goals are to produce a new edition of their book of protein and nucleic acid sequences of immunoglobulins, T-cell receptors and other members of the immunoglobulin superfamily. They also collect an organize all sequences in the format used in earlier editions, which provide classified and aligned sequences such that rapid examination and comparison of the data are possible. data.pri [immunoglobulin] amino acid sequences; [immunoglobulin] nucleotide sequences; sequence alignments data.sec [amino acid sequence, immunoglobulin] functional features; [nucleotide sequence, immunoglobulin] functional features; antibody specificities; literature citations /// entry AGRICOLA name.now AGRICOLA charter AGRICOLA is a bibliographic database consisting of records for literature citations of journal articles, monographs, theses, patents, software, audiovisual materials and technical reports relating directly and peripherally to agriculture and the life sciences. It cover materials both in the document collection of the N.A.L. and in other libraries. The N.A.L. staff and its cooperators regularly scan over 2,500 incoming journal titles for input to the database. data.pri [agriculture] literature citations data.sec [life sciences] literature citations /// entry AIMB name.now Database of Researchers in Artificial Intelligence and Molecular Biology charter AIMBs goal is to provide a list of researchers in Molecular Biology and Artificial Intelligence. data.pri people [AI researchers] data.sec - /// entry AMINODB name.now Amino Acid Database charter AMINODB seeks to list physical properties of amino acids, such as crystal volume, bulkiness, side chain electron content, molecular weight, number of heavy atoms, behavior in protiens and stability. data.pri [amino acid] molecular properties data.sec [molecular biology] literature citations /// entry BCAD name.now BioCommerce Abstracts and Directory charter BCAD is a worldwide news indexing service and international directory focusing on the commercial applications of biotechnology. The database is available through Dialog and Data-Star data.pri abstracts [magazines]; abstracts [newsletters]; abstracts [newspapers]; abstracts [scientific journals]; abstracts [press releases]; profiles [from company literature]; profiles [from questionnaires] data.sec literature citations [names of organizations]; index terms [organizations] /// entry BIOSISCONN name.now BIOSIS Connection charter BIOSIS Connection is an online end-user system seeking to provide life science researchers with a variety of life science research databases and professional services. data.pri [life science] databases; [life science] literature citations; [AIDS] literature citations data.sec - /// entry BIOSISP name.now BIOSIS Previews charter BIOSIS Previews is the machine readable version of citations from Biological Abstract (BA) and BA/RRM (reviews, reports, and meetings). Drawn from over 9,000 sources, BIOSIS Previews reports research in the entire life sciences area. data.pri [biological] literature abstracts; [biological] literature citations data.sec [biological] index terms /// entry BKS name.now Biotech Knowledge Sources charter BKS is a comprehensive monthly listing of new books, journals, market research reports and other publications in the field of biotechnology. It also lists forthcoming conferences, courses and exhibitions. data.pri conferences data.sec authors/editors [books]; publishers; organizers [conferences] /// entry BMCD name.now NIST/CARB Biological Macromolecule Crystallization Database charter BMCD contains information on the crystallization conditions for 1025 crystal forms of 616 biological macromolecules. data.pri protein [crystallization conditions] data.sec literature citations [crystallization] /// entry BMR name.now BioMagRes charter BMR is an archival repository for NMR spectroscopic data on proteins. This sequence-related database will contain primary NMT data and chemical, structural, and dynamic information derived from NMR data. data.pri sequences; NMR [coupling constants]; NMR [NOEs]; NMR [shift assignments] data.sec 3D coordinates; NMR [experimental conditions] /// entry BRD name.now Berlin RNA Data Bank charter BRD seeks to list all available published 5S rRNA sequence data. data.pri [5S rRNA] nucleotide sequences data.sec [nucleotide sequence, rRNA] secondary structure /// entry CARBBANK name.now Complex Carbohydrate Structural Database and CarbBank software charter The purpose of CARBBANK is to collect and maintain a structural and citation database for complex carbohydrates data.pri carbohydrate sequences data.sec [carbohydrate sequence] functional features; index terms; literature citations; [carbohydrate sequence] sources /// entry CAS name.now CAS ONLINE charter This service furnishes English language abstracts of scientific literature, bibliographic citations, substance related information and index entries from Chemical Abstracts. data.pri [chemical] literature abstracts; [chemical] literature citations data.sec [chemical] index terms /// entry CASORF name.now CAS ONLINE Registry File charter The REGISTRY FILE is a chemical structure and dictionary database that contains more than 10 million unique substance records identified by Chemical Abstracts Service (CAS). Records in the file each contain the CAS Registry Number, CA index name and commonly used synonyms, a structure diagram, and molecular formula, all of which are searchable or displayable. Also displayable are: the 10 most recent documents citing the substance since 1967, an indication of the total number of citations to the substance in the CA file, and the occurrence of a reference(s) in the CAOLD File, and the presence of calculated 3D coordinates, if applicable. data.pri [chemical] substances data.sec index terms; [chemical] literature citations; molecular structure [chemical representations]; molecular formulae /// entry CATGENE name.now Domestic Cat Gene Frequencies: a catalogue and bibliography charter CATGENE contains gene frequency data for up to 11 (mainly coat color) loci from more than 360 populations of domestic cats scattered all over the globe. data.pri [domestic cat] gene frequencies data.sec [cat gene frequency distribution] statistical analysis /// entry CCD name.now Cambridge Structural Database charter CCD's goals are the maintenance, evaluation and distribution of the database, development of software for search, display and analysis of the contents of CSD, and the scientific utilization of the CSD for research purposes data.pri [small molecule] atomic coordinates data.sec - /// entry CGC name.now Caenorhabditis Genetics Center charter CGC seeks to list C. elegans strains with genetic map data and bibliographic information. data.pri organisms [C. elegans strains] data.sec [C. elegans] genetic maps; literature citations /// entry CSRS name.now Compilation of Small RNA Sequences charter Through frequent contact with those working in the area, all sequences of small RNAs not directly involved in protein synthesis (e.g., snRNAs and scRNAs) are listed. data.pri [small RNA] nucleotide sequences data.sec - /// entry CURRCONTS name.now Current Contents(R) charter Current Contents(R) is a comprehensive listing of the contents pages of over 1200 of leading life sciences journals. data.pri literature abstracts [life sciences] data.sec - /// entry CUTG name.now Codon Usage Tabulation from GENBANK charter CUTG is a tabulation of codon usages in all available genes from GENBANK. data.pri codon usage data.sec [GENBANK] cross-references /// entry DBIR name.now Directory of Biotechnology Information/Resources charter DBIR describes information resources for biotechnology and identifies individuals to contact for more detailed information. It includes resources such as biotechnology centers; culture collections; other databases; electronic bulletin boards; networks dealing with biotechnology data; biotechnology journals; organizations specializing in collecting and disseminating biotechnology information; selected monographs, reviews and compilations of other information resources which focus on biotechnology; and nomenclature committees established to standardize the terminology used in all areas of biotechnology. data.pri [biotechnology] databases data.sec database access information; database characteristics; index terms; database maintenance [hardware]; database maintenance [software] /// entry DCT name.now Drosophila Codon Tables charter - data.pri [Drosophila] codon usage; [transposable element ORF] nucleotide sequences; [host gene] nucleotide sequences data.sec [database] cross-references; [transposable element ORF] base composition; [host gene] base composition /// entry DDBJ name.now DNA Data Bank of Japan charter DDBJ is primarily concerned with covering DNA data produced in Japan and has close collaborative ties with GENBANK and EMBL. data.pri nucleotide sequences data.sec [nucleotide sequence] functional features; index terms; [molecular biology] literature citations; taxonomic classification /// entry DIALOGMC name.now Dialog Medical Connection charter Dialog Medical Connection is a network information source composed of four libraries; Medical Reference Library, BioScience Library, Science/Technology Library and the General Reference Library. data.pri literature citations data.sec abstracts /// entry DRHPL name.now Database for the Repository of Human and Mouse Probes and Libraries charter DRHPL maintains data on chromosomal assignment, RFLPs, literature references, distribution lists, and cross-references for the chromosome-specific libraries and human and mouse genomic and cDNA clones maintained by the Repository data.pri [human cDNA] clones; [human genomic] clones; clones [chromosome specific libraries]; RFLPs data.sec clones [descriptions]; clones [distribution lists]; clones [library characterizations]; literature citations /// entry DROSO name.now Genetic Variations of Drosophila melanogaster charter DROSO is a computer readable form of the book "Genetic Variations of Drosophila melanogaster" on BIONET with a program to search the book for keywords and find loci near any genetic region or other genetic marker. data.pri - data.sec [D. melanogaster] chromosome rearrangements; [D. melanogaster] genetic mutations; [D. melanogaster non-chromosomal] phenotypes; organisms [D. melanogaster, wild-type strains] /// entry ECOLI name.now E.Coli K12 Genome and Protein Database charter - data.pri nucleotide sequences; amino acid sequences data.sec gene name; annotation [protein]; gene [location]; nucleotide sequence [features] /// entry EMBL name.now The EMBL Nucleotide Sequence Database charter EMBL seeks to collect, organize, document and make freely available the body of known nucleotide sequence data. data.pri nucleotide sequences data.sec [nucleotide sequence] functional features; index terms; [molecular biology] literature citations; taxonomic classification /// entry EMBOPRO name.now EMBOPRO charter EMBOPRO is a protein sequence database, automatically generated from the EMBL Data Library of nucleotide sequences. data.pri amino acid sequences data.sec [amino acid sequence] functional features; index terms; [EMBL] cross-references /// entry ENZYME name.now The ENZYME data bank charter ENZYME contains the following data for each type of characterized enzyme for which an EC number has been provided: EC number, names(recommended and alternative), catalytic activity, cofactors and cross-references to SWISS-PROT. data.pri enzyme [catalytic activity]; enzymes [EC numbers] data.sec index terms /// entry EPD name.now Eukaryotic Promoter Database charter published in the leading scientific journals of the field. EPD provides information on experimentally defined eukaryotic promoters for which sequences are available but not necessarily annotated in the EMBL Data Library. It is the outcome of a critical evaluation of transcript-mapping and gene-expression data data.pri nucleotide sequences [eukaryotic POL II promoter] data.sec index terms; [EMBL] cross-references; [eukaryotic POL II promoter sequence] literature citations /// entry GBSOFT name.now The GenBank Software Clearinghouse charter Contains information about software available for genetic sequence analysis for many kinds of computers as well as sequence handling time-sharing services. data.pri program names [software] data.sec software [acquisition information]; software [functions]; software [system requirements] /// entry GC name.now Gene Communications charter GC is intended as a guide to human genome clone availability and as a reference source to articles describing the original cloning procedure. It lists published reports of cDNA, genomic and synthetic clones comprising gene and pseudogene sequences, uncharacterized DNA segments and repetitive DNA elements. data.pri [nucleotide sequence, cloned] literature citations data.sec - /// entry GDB name.now Genome Data Base charter The goal of GDB is to provide a genetic mapping and disease database to support the mapping and sequencing of the human genome. data.pri genes; probes; polymorphic information; literature citations data.sec - /// entry GDN name.now Gene Diagnosis Newsletter charter GDN is a database of publications which detail the analysis and diagnosis of human inherited disease using recombinant DNA methods. It is intended to serve both the clinical geneticist and diagnostic laboratories as a quick and up-to-date reference source to current possibilities in this field. data.pri [disease, human inherited] literature citations data.sec - /// entry GENBANK name.now The GenBank Genetic Sequence Data Bank charter GenBank is a U.S. government sponsored, internationally available collection of all reported nucleotide sequences, catalogued and annotated for sites of biological significance. data.pri nucleotide sequences data.sec [nucleotide sequence] functional features; index terms; [molecular biology] literature citations; taxonomic classification /// entry GRIN name.now Germplasm Resources Information Network charter The goal of GRIN is to record, identify, inventory and evaluate information on all of the 8000 species of plants in the National Plant Germplasm System. data.pri accession [germplasm samples] data.sec inventory information; germplasm [evaluation information] /// entry HDB name.now Hybridoma Data Bank: A Data Bank on Immunoclones charter HDB seeks to collect and maintain information on hybridomas, cloned cell lines and monoclonal antibodies. data.pri hybridomas; clones [immuno-]; [monoclonal] antibodies data.sec index terms; literature citations /// entry HGIR name.now Human Genome Information Resource charter The HGIR is supporting the mapping efforts (Phase I) of the Human Genome Initiative and will provide a collection of results from physical mapping laboratory experiments in a form amenable to "ordering analysis". data.pri restriction fragments; physical maps [data]; nucleotide sequences [probes] data.sec - /// entry HGMCR name.now NIGMS Human Genetic Mutant Cell Repository Catalog of Cell Lines and DNA Samples charter HGMCR provides descriptions of cell cultures and DNA samples available for genetic disease studies and gene mapping. data.pri [human] cell lines; DNA samples [human cell line]; somatic cell hybrids [human & rodent] data.sec cell lines [characteristics]; index terms /// entry HGML name.now The Howard Hughes Medical Institute Human Gene Mapping Library charter HGML seeks to list information relevant to human and comparative gene mapping. data.pri [human] DNA probes; [human] genetic maps; [molecular biology] literature citations; [human] RFLPs data.sec index terms /// entry HIVSSA name.now HIV Sequence & Sequence Analysis Database charter - data.pri [HIV] amino acid sequences; [HIV] nucleotide sequences; sequence alignments data.sec viruses [AIDS-related animal] /// entry ILDIS name.now International Legume Database and Information Service charter The long term aims of the ILDIS Project are to provide: 1) a source of information for the development of all useful legume crops and legume products, especially in the arid zones and humid tropics; and 2) a focus for the study and conservation of legumes. data.pri [name] legume data.sec [legume] literature citations; [tribe membership] legume; [geographical distribution] legume; legume [synonyms]; legume [vernacular names]; legume [life form]; legume [conservation status]; legume [economic importance]; legume [notes] /// entry IUDSC name.now Indiana University Drosophila Stock Center Stock List charter The purpose of the database is to allow the curator to effectively maintain, build and distribute Drosophila collections. data.pri [genotype] Drosophila data.sec breakpoints; [Drosophila] stock number; [Drosophila] tray number; [Drosophila] chromosome number /// entry JIPIDB name.now Biological Database: Asian and Oceania Node of the International Protein Information Database charter The database is the extension of the sequence database (JIPIDS), and has two additional categories: Property (characterization) and Biological Activity, (containing two subcategories: description of the data and numerical value of the data). data.pri [protein] molecular biological activity data.sec [database] cross-references; enzymes [cofactor]; protein [organization]; protein [sources]; protein [function]; protein [optimal PH]; amino acid sequences /// entry JIPIDM name.now NMR Database on Biopolymers: Asian and Oceania Node of the International Protein Information Database charter - data.pri - data.sec - /// entry JIPIDN name.now Natural Variant Database: Asian and Oceania Node of the International Protein Information Database charter - data.pri - data.sec - /// entry JIPIDP name.now Physical Property Database charter JIPIDP contains information on protein transition number, transition states, and conditions. Essentially the database deals with thermal properties and will extend to optical properties as well. data.pri nucleotide sequences; amino acid sequences data.sec - /// entry JIPIDS name.now Protein Sequence Database: Asian and Oceania Node of the International Protein Information Database charter JIPIDS collects data from journals published in Asia and Oceania and are in direct contact with China CODATA macrobiomolecule group as well as with Shanghai, Taiwan, Korea, India and Australia. The following specific fields are covered: plants, plant virus, genomic and protein information for E.Coli, rice, T4 phage, amylases, ferredoxins, kalikreins, calmodulins and thioredoxins. data.pri nucleotide sequences; amino acid sequences data.sec [database] cross-references; [biological] literature citations; [nucleotide sequence] functional features; index terms; [amino acid sequence] functional features; [sequence] sources /// entry JIPIDSN name.now Nucleic Acid Sequence Database charter - data.pri nucleotide sequences; amino acid sequences data.sec gene name; gene location; protein [coding regions]; sources /// entry JIPIDV name.now Variant Database: Asian and Oceania Node of the International Protein Information Database charter The database is the extension of JIPIDS, JIPIDP and JIPIDB. The extensions are the categories of Method (naming enzyme used and special notes on the mutagenesis) and Modification of the replacement data.pri amino acid sequences [artificial variants]; [variant] biologicl activity and physical properties; nucleic acid sequences [variants] data.sec [database] cross-references; index terms; [molecular biology] literature citations; [amino acid mutagenizing] methods; [amino acid] chemical modification; [protein] molecular properties; [protein variant] sources /// entry LIMB name.now LiMB charter The goal of LiMB is to provide the scientific community with a comprehensive overview of databases relevant to molecular biology and related data sets. data.pri [molecular biology] databases data.sec database access information; database contribution information; database characteristics; [molecular biology] literature citations; database maintenance [hardware]; database maintenance [software] /// entry LIPIDPHASE name.now Lipid Phase Database charter LIPIDPHASE seeks to compile evaluated lipid phase behavior in a single, continuously revised computer file with a view to providing ready access to the data itself and to the appropriate literature. data.pri lipids [miscibility properties]; lipids [mesomorphic phase transition behavior] data.sec methods; lipid [aqueous phase composition]; bibliographic information; lipids [enthalpy change]; lipids [transition temperature]; lipids [transition type] /// entry LYSIS name.now Proteolysis Database charter LYSIS is a collection of data and bibliographic citations on the observed cleavage sites in known sequences of peptide and protein substrates by endopeptidases (EC 3.4.21-99). data.pri [protein substrate cleavage site] literature citations; proteinase specificity data.sec peptides [synthetic substrates]; proteinase inhibitors; proteinase sources; enzyme [substrate modifications] /// entry MBCRR name.now MBCRR Protein Family Diagnostic Pattern Database and Search Tool charter MBCRR is a database of consensus-like protein sequence patterns derived from a set of homologous sequences in SWISS-PROT. Families of related protein sequences are identified by running the entire SWISS-PROT database against itself. data.pri [diagnostic sequence patterns] amino acid sequences; amino acid class covering (AACC) pattern data.sec [pattern information content] amino acid sequences; cluster trees; enzymes [EC numbers]; amino acid [loci] /// entry MEDLINE name.now MEDLINE and Backfiles charter MEDLINE seeks comprehensive coverage of the world's biomedical literature. data.pri [medical] index terms; [biological] index terms; [biological] literature citations; [medical] literature citations data.sec [medical] literature abstracts; [biological] literature abstracts; index terms [medical]; literature abstracts /// entry MICIS name.now Microbial Culture Information Service charter MiCIS is part of the DTI's campaign to foster the industrial development of biotechnology through support of industrially oriented work in culture collections of microorganisms and information services for industry. Eventually it will contain data from all the U.K. National Culture Collections (over 30,000 strains). The physical properties of microorganisms listed in MiCIS include growth and preservation, sensitivity and tolerance, substrate utilization, enzymes and metabolites produced and morphology. data.pri [cultured] microorganisms data.sec literature citations; [microorganism] sources; taxonomic classification; microorganisms [history] /// entry MICROGERM name.now Microbial Germplasm Database and Network charter The Microbial Germplasm Database and Network is being implemented to facilitate communication between scientists who are involved in plant-related studies and who maintain research-oriented 'working collections' of microorganisms, nematodes and/or subcellular entities. The database and network will provide on-line information regarding collections and accessions and will serve to apprise the scientific community of the importance of the germplasm in these many collections. data.pri laboratories [focus]; cultures [curator]; germplasms data.sec cultures [distribution]; laboratories [computer capabilities] /// entry MINE name.now Microbial Information Network Europe charter MINE is an Integrated Catalogue Project, incorporating a European Network of Microbial Culture Collection Databanks. Its objective is to establish a computer network of microbial information across Europe. data.pri microbial strain collection information data.sec - /// entry MIPS name.now Martinsreid Institute for Protein Sequence Data charter MIPS serves as the European partner of PIR, improving accessibility for European researchers and attempting speedier processing of protein sequences submitted for publication. data.pri amino acid sequences data.sec [amino acid sequence] functional features; index terms; [amino acid sequence] literature citations /// entry MOUSE name.now List of Mouse DNA Clones and Probes charter List of Mouse DNA Clones and Probes is a booklet containing (1) a list of mouse probes and clones and (2) a map showing the location of the genes in the mouse for which probes and clones are listed. data.pri [mouse] probes; [mouse] clones data.sec [mouse clone and probe] genetic maps /// entry MOUSEMAN name.now Linkage and synteny homologies between mouse and man charter Linkage and synteny homologies between mouse and man is a booklet containing (1) a man on mouse homology map and (2) a list of homologous loci. data.pri genetic maps [man on mouse homology maps]; genetic map [man on mouse homologous loci] data.sec - /// entry MSDN name.now Microbial Strain Data Network charter MSDN is an international network set up to establish pathways of communication concerning collections of data on microbial strains and cultured cell lines held in culture collections and other laboratories or databases to provide a mechanism for locating properties. MSDN does not list the strains at individual laboratories, but indicates (using index terms) the categories of data available from each center and the means used to record and access these data. MSDN is not merely a database. It is a communications mechanism providing support services, such as suggesting standards for the communication of data and holding training courses on the use of computers in microbiology. It is also a linking mechanism, linking related databases in order to facilitate data retrieval. The information provided under 'data' refers to the MSDN Central Directory database only. data.pri [microbial strain database] cross-references; [microbial strain] index terms data.sec database access information; database characteristics; database contribution information /// entry NAPRALERT name.now NAPRALERT charter NAPRALERT seeks to computerize all references to the isolation of chemical compounds from living organisms and/or the pharmacology of natural products pure or crude. All chemicals isolated from living organisms are cross referenced with their pharmacological and biological sources. Chemotaxonomy is supported as extreme care is placed on taxonomic and chemical nomenclature. The chemical compound citations have an emphasis on secondary metabolites and the taxonomy citations are primarily for plants and bacteria. data.pri [chemical compound] literature citations data.sec [pharmacology] literature citations; [taxonomy] literature citations /// entry NEWAT name.now NEWAT charter - data.pri - data.sec - /// entry OLIGONUC name.now Chemically Synthesized Oligonucleotide Database charter Due to their importance in all areas of biomedical sciences, a database of chemically synthesized oligonucleotides has become necessary. data.pri [chemically synthesized oligonucleotide] nucleotide sequences data.sec literature citations; oligonucleotide sequences [features]; index terms /// entry OMIM name.now OMIM charter - data.pri [human inherited] diseases; literature citations; [human] genetic maps; genetic maps [human] data.sec - /// entry PDB name.now Protein Data Bank charter PDB seeks comprehensive coverage of bibliographic, atomic coordinate and crystallographic structure factor data for biological macromolecules. data.pri [biomacromolecule] atomic coordinates data.sec [biomacromolecule] functional features; [biomacromolecule] literature citations; [biomacromolecule] molecular properties /// entry PIR name.now National Biomedical Research Foundation Protein Identification Resource and Protein Sequence Database charter PIR collects data on completed sequence proteins, amino-terminal sequences and bibliographic citations for amino acid sequences. PIR also contains an auxiliary database for sequences in preparation and additional fragmentary and predicted sequences. data.pri amino acid sequences data.sec [amino acid sequence] functional features; index terms; [amino acid sequence] literature citations /// entry PKCDD name.now Protein Kinase Catalytic Domain Database charter PKCDD is useful for the classification and alignment of new protein kinase data.pri amino acid sequences [protein kinases] data.sec literature citations [sequences] /// entry PMD name.now Protein Mutant Database charter The goal of PMD is to collect protein mutants artificially derived from wild-type proteins. Natural mutants are also collected with the exception of those with large numbers of variants. data.pri mutants [protein] data.sec mutants [wild-type activity or structure difference]; mutants [expression system]; amino acid [wild-type] entry PPR name.now Plasmid Prefix Registry charter The Plasmid Prefix Registry is a database of plasmid prefixes in which registrants reserve a plasmid prefix in the Registry and have sole use of it when naming plasmids. data.pri plasmid prefixes data.sec plasmid prefixes [locale of registrants]; plasmid prefixes [name of registrants] /// entry PRCTR name.now Plasmid Reference Center Transposon Registry charter The Plasmid Reference Center Transposon registry allocates numbered blocs to distinguish independent isolates data.pri transposons data.sec laboratory [location] /// entry PRFLITDB name.now PRF/LITDB charter - data.pri [amino acid sequence] literature abstracts; [amino acid sequence] literature citations data.sec index terms /// entry PRFSEQDB name.now PRF/SEQDB charter PRFLITDB started as a secondary journal called Peptide Information, containing biblographic data and telegram-like abstracts of papers related to peptide research. In 1979, it was compiled by computer and was called PRFLITDB. Its domain is now both peptide and protein literature, with over 1000 journals being routinely checked and containing check tags for fact data, such as sequence data, NMR data, Kcat mutation data and modification in amino acid sequences data.pri amino acid sequences data.sec [amino acid sequence] functional features; [biological] literature citations /// entry PROSITE name.now PROSITE charter PROSITE seeks to be a compilation of biologically significant protein sequence patterns. data.pri amino acid [patterns] data.sec index terms /// entry PSEQIP name.now PseqIP charter PSEQIP is a transient laboratory effort for compiling and dispersing up to date, complete, non-overlapping protein sequence data based on data from other established databases. data.pri amino acid sequences data.sec index terms /// entry PSS name.now Protein Secondary Structure Database charter PSS establishes a correlation between PDB and PIR which allows for retrieval of any desired fragment sequence for statistical analysis. data.pri nucleotide sequences; amino acid sequences data.sec protein [crystal composition]; secondary structure features [protein] /// entry PTG name.now Protein Translation of GENBANK charter PTG provides correct, automatic translation of all experimentally determined protein coding regions annotated in GENBANK. data.pri amino acid sequences data.sec [nucleotide sequence] functional features; index terms; [molecular biology] literature citations; taxonomic classification /// entry QTDGPD name.now Quest 2D Gel Protein Database charter The major aim is to identify many of the spots on the protein map with basic characterizations of the rat, mouse and yeast cell protein patterns including basic regulatory responses, phosphorylation patterns of subcellular fractions and turnover rates. The gels have been specially formulated to routinely provide high resolution and reproducibility. data.pri gel electrophoretic data [protein, spot representation] data.sec gel electrophoretic data [protein, spot coordinates]; gel electrophoretic data [protein, spot quality]; [protein] molecular properties /// entry RED name.now Restriction Enzyme Database charter Encompasses information about restriction endonucleases, including recognition sequences, cleavage sites, strains, and literature references. data.pri restriction enzymes data.sec [restriction enzyme] functional features; literature abstracts; literature citations; [restriction enzyme isolation] methods /// entry RFLPD name.now CEPH Public Database charter RFLPD's goal is to collect a large number of polymorphic markers on a common set of families for the development of a high resolution genetic map. data.pri polymorphic markers [RLFPs] data.sec genotypes [CEPH panel families] /// entry SEQANALREF name.now Sequence Analysis Literature Reference Data Bank charter SEQANALREF seeks to list all literature references relative to the field of sequence analysis. data.pri [sequence analysis] literature citations data.sec index terms /// entry SIGPEP name.now SIGPEP charter SIGPEP's goal is to provide a collection of signal peptides for statistical analysis data.pri [signal peptide] amino acid sequences data.sec literature citations /// entry SIGSCAN name.now Signal Scan charter Signal Scan is a program which has been developed to aid the molecular biologist in determining what eukaryotic transcription factor elements, and other significant elements, may exist in a DNA sequence. To accomplish this a database of these elements has been initiated. This program, at present, is most useful for analyzing mammalian sequences due to the prevalence of mammalian elements in the database. A list of elements may also be entered by the user. Signal Scan uses both elements derived from biochemical characterization and elements from derived consensus sequences to match against a user input DNA sequence. While any sequence element matching an element in the database will be reported by the program, the determination of the biological relevance of the element is left up to the investigator. data.pri nucleotide sequences [transcriptional element] data.sec literature citation [transcriptional element]; proteins [transcription factor, names] /// entry SRRSD name.now 16S Ribosomal RNA Sequence Database charter Covers all major and minor journals published in English, French, or German. Most data now comes from authors prior to, and sometimes in lieu of, publications. data.pri [16S rRNA] nucleotide sequences data.sec [16S rRNA nucleotide sequence] functional features /// entry SRSRSC name.now Small Ribosomal Subunit RNA Sequence Compilation charter SRSRSC seeks to list all published small ribosomal subunit RNA sequences. data.pri [small subunit rRNA] nucleotide sequences data.sec [sequence] sources; nucleotide sequence, [small subunit rRNA] secondary structure features; [molecular biology] literature citations /// entry SVFORTYMUT name.now SV40 Large T Antigen Mutant Database charter - data.pri [SV40 large T antigen deletion & insertion] mutants; [unsequenced SV40 large T antigen deletion & insertion] mutants; [SV40 large T antigen mutant] amino acid substitutions; [unsequenced SV40 large T antigen mutant] amino acid substitutions; [truncated SV40 large T antigen mutants] mutants data.sec literature citations; [SV40 large T antigen mutant parents] mutants /// entry SWISSPROT name.now SWISS-PROT Protein Sequence Data Bank charter SWISS-PROT seeks to list all protein sequences and related data. data.pri amino acid sequences data.sec [amino acid sequence] functional features; index terms /// entry TFD name.now Transcription Factor Database charter The purpose of this database is to organize information regarding transcription factors and their cognate sequences. data.pri nucleotide sequences; amino acid sequences; proteins [transcription factor, names] data.sec sequence location; literature citations /// entry TOXNET name.now Toxicology Data Network charter Each of TOXNET's files concentrates on chemical and physical properties of potentially hazardous chemicals. data.pri [toxic] chemicals data.sec toxin properties; [chemicals] hazardous properties; [chemical] toxicity /// entry TRF name.now The Taxonomic Reference File at BIOSIS charter The TRF is made up of several kinds of files: the Name File and Hierarchy Files. The Name File has about 12,600 bacterial names. The Bibliographic File currently contains about 13,300 bacterial taxonomy references. The Hierarchy Files indicate relative taxonomic placement according to four schemes. The bibliographic component is not available online. Searches can be done on request. data.pri organisms [bacterial] data.sec index terms; taxonomic classification; organisms [bacterial, synonyms] /// entry TRNAC name.now tRNA Compilation charter TRNAC seeks to compile published tRNA sequences. data.pri [tRNA] nucleotide sequences; [tRNA gene] nucleotide sequences; sequence alignments data.sec [molecular biology] literature citations; [tRNA] secondary structures; [tRNA] sources /// entry VECTOR name.now Cloning Vector Sequence Database charter Data collection was done informally at MIT as a service to the MIT biological community of users. The database was donated to PIR which made it available. It was then taken to the Max-Plank Institute where additional sequences were added. data.pri [cloning vector] nucleotide sequences data.sec index terms; [molecular biology] literature citations; [cloning vector nucleotide sequence] base composition; [cloning vector] sources; [database] cross-references /// ******** LiMB DATA DICTIONARY ********* Field Definition entry AAAAAAAA (Name of entry.) number Number that will always be associated with a given data bank. history History of entry. status (known:know about; no-response:no form back; response:form returned) res.nam Name of respondent. res.add Address of respondent. res.tel Telephone number of respondent (as dialed from U.S.A.) res.net Network address of respondent. gen.nam Name for general inquiry. gen.add Address for general inquiry. gen.tel Telephone number for general inquiry (as dialed from U.S.A.) gen.net Network address for general inquiry. con.nam Name for contributing data. con.add Address for contributing data. con.tel Telephone number for contributing data (as dialed from U.S.A.) con.net Network address for contributing data. acc.nam Name for acquiring data. acc.add Address for acquiring data. acc.tel Telephone number for acquiring data (as dialed from U.S.A.) acc.net Network address for acquiring data. name.now Name of database. name.alt Alternative names of database. name.bad Obsolete/incorrect names of database. source Source of data in database. funding Funding base for data bank. citation Recent publications describing database and/or data bank. charter Formal or informal charter of database effort. cross.nam Other databases to which this database is cross-referenced. data.pri Primary data items in the database. data.sec Secondary data items in the database. hardware Hardware the data are maintained on. op.sys Operating system hardware is run under. dbms Software system used for maintaining data. language Programming language used for software system. software Software that is distributed with the database. format Format used for distributed flat text files. access Limitations on access to data. update Frequency of database updates. con.onl Can contributions be made to database on-line? con.mag Can contributions be made to database on magnetic tape? con.flp Can contributions be made to database on floppy disk? con.elm Can contributions be made to database by electronic mail? con.pap Can contributions be made to database on hardcopy? acc.onl Is database distributed on-line? acc.mag Is database distributed on magnetic tape? acc.flp Is database distributed on floppy disk? acc.elm Is database distributed on electronic mail? acc.pap Is database distributed on hardcopy? byt.all Number of bytes contained in the database. byt.pri Number of bytes contained in primary data items in the database. ent.pri Number of entries (single primary data items with associated secondary data items) in the database. comment Usefull information not fitting into other fields. /// End of entry ***** LiMB 2.0 Full Listing ******* entry AANSPII number 10001 history fm 04/07/87 initial entry cb 12/06/86 sent questionnaire to Kabat cb 04/03/87 response received from H.Perry gk 04/02/90 updated entry from returned questionnaire status response res.nam Dr. Harold Perry res.add BBN Laboratories, Inc. 10 Moulton Street Cambridge, MA 02238 U.S.A. res.tel (617) 497-3622 res.net hperry@bbn.com gen.nam Dr. Elvin Kabat gen.add Bldg 8 Room 126 National Institutes of Health Bethesda, MD 20892 U.S.A. gen.tel (301) 496-0316 gen.net - con.nam Dr. Harold Perry con.add BBN Laboratories, Inc. 10 Moulton Street Cambridge, MA 02238 U.S.A. con.tel (617) 497-3622 con.net hperry@bbn.com acc.nam Dr. Harold Perry acc.add BBN Laboratories, Inc. 10 Moulton Street Cambridge, MA 02238 U.S.A. acc.tel (617) 497-3622 acc.net hperry@bbn.com name.now Amino Acid and Nucleotide Sequences of Proteins of Immunological Interest nam.alt Kabat database nam.bad - source literature; other database (GENBANK) funding NIH research grant to Columbia Univ. with subcontract to BBN citation - charter ANSPII's goals are to produce a new edition of their book of protein and nucleic acid sequences of immunoglobulins, T-cell receptors and other members of the immunoglobulin superfamily. They also collect an organize all sequences in the format used in earlier editions, which provide classified and aligned sequences such that rapid examination and comparison of the data are possible. cross.name - data.pri [immunoglobulin] amino acid sequences; [immunoglobulin] nucleotide sequences; sequence alignments data.sec [amino acid sequence, immunoglobulin] functional features; [nucleotide sequence, immunoglobulin] functional features; antibody specificities; literature citations hardware DEC MicroVax; Sun 3/60 op.sys UNIX dbms NIH-DRR supported PROPHET system language - software - format flat text file: line type format similar to GENBANK and PIR access no limitations updates yearly con.onl yes con.mag yes con.flp yes con.elm no con.pap yes acc.onl no acc.mag yes acc.flp no acc.elm no acc.pap yes byt.all 7700000 byt.pri 900000 ent.pri 5300 comment - /// entry AGRICOLA number 10074 history jl 11/29/89 initial entry gk 03/06/90 updated entry from returned questionnaire status response res.nam Gary McCone res.add ISD 5th floor National Agricultural Library 10301 Baltimore Blvd. Beltsville, MD 20705 U.S.A. res.tel (301) 344-3813 res.net - gen.nam Reference Branch gen.add Room 111 National Agrcultural Library 10301 Baltimore Blvd. Beltsville, MD 20705 U.S.A. gen.tel (301) 344-4479 gen.net - con.nam - con.add - con.tel - con.net - acc.nam - acc.add - acc.tel - acc.net - name.now AGRICOLA nam.alt AGRICultural OnLine Access nam.bad - source journals; monographs; theses; patents; software; technical reports; audiovisual materials funding N.A.L. citation - charter AGRICOLA is a bibliographic database consisting of records for literature citations of journal articles, monographs, theses, patents, software, audiovisual materials and technical reports relating directly and peripherally to agriculture and the life sciences. It cover materials both in the document collection of the N.A.L. and in other libraries. The N.A.L. staff and its cooperators regularly scan over 2,500 incoming journal titles for input to the database. cross.name - data.pri [agriculture] literature citations data.sec [life sciences] literature citations hardware - op.sys - dbms - language - software - format USMARC format access no limitations: free for USDA personnel, on a cost recovery basis for others updates continuously con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl yes acc.mag yes acc.flp no acc.elm no acc.pap yes byt.all - byt.pri - ent.pri 2700000 comment AGRICOLA is available online from DIALOG Information Services, Inc. and BRS Information Technologies. It is also available on CD-ROM. /// entry AIMB number 10091 history gk 05/15/90 initial entry status response res.nam Dr. Lawrence Hunter res.add Bldg. 38A, MS-54 National Library of Medicine Bethesda, MD 20894 U.S.A. res.tel (301) 496-9300 res.net hunter@nlm.nih.gov gen.nam Dr. Lawrence Hunter gen.add Bldg. 38A, MS-54 National Library of Medicine Bethesda, MD 20894 U.S.A. gen.tel (301) 496-9300 gen.net hunter@nlm.nih.gov con.nam Dr. Lawrence Hunter con.add Bldg. 38A, MS-54 National Library of Medicine Bethesda, MD 20894 U.S.A. con.tel (301) 496-9300 con.net hunter@nlm.nih.gov acc.nam Dr. Lawrence Hunter acc.add Bldg. 38A, MS-54 National Library of Medicine Bethesda, MD 20894 U.S.A. acc.tel (301) 496-9300 acc.net hunter@nlm.nih.gov name.now Database of Researchers in Artificial Intelligence and Molecular Biology nam.alt AIMB database nam.bad - source submissions from researchers; attendance lists from conferences; other publications funding part of internal National Library of Medicine effort; publicly funded citation - charter AIMBs goal is to provide a list of researchers in Molecular Biology and Artificial Intelligence. cross.name - data.pri people [AI researchers] data.sec - hardware Macintosh; Sun op.sys Macintosh System 6.0.4; UNIX dbms Acius 4th Dimension language - software - format DIF, SYLK, plain text for machine parsing, and plain text for human readability access no limitations updates As necessary at the convenience of the government con.onl no con.mag no con.flp no con.elm yes con.pap yes acc.onl yes acc.mag no acc.flp yes acc.elm yes acc.pap no byt.all 40000 byt.pri - ent.pri 117 comment - /// entry AMINODB number 10042 history fm 07/01/87 initial entry fm 07/01/87 sent questionnaire to C.Froemmel gk 07/26/90 updated entry from returned questionnaire status response res.nam Dr. Cornelius Froemmel res.add Institut fur Biochemie Hessische Strasse 3-4 Berlin DDR-1040 EAST GERMANY res.tel 286-2123 res.net froemmel@embl.bitnet gen.nam Dr. Cornelius Froemmel gen.add Institut fur Biochemie Hessische Strasse 3-4 Berlin DDR-1040 EAST GERMANY gen.tel 286-2123 gen.net froemmel@embl.bitnet con.nam - con.add - con.tel - con.net - acc.nam - acc.add - acc.tel - acc.net - name.now Amino Acid Database nam.alt AMINODB; AMATIES nam.bad - source literature funding - citation - charter AMINODB seeks to list physical properties of amino acids, such as crystal volume, bulkiness, side chain electron content, molecular weight, number of heavy atoms, behavior in protiens and stability. cross.name - data.pri [amino acid] molecular properties; amino acid [properties in protein] data.sec [molecular biology] literature citations hardware VAX; IBM; ATARI op.sys VMS; DOS; TOS dbms in-house language Pascal software - format flat file: line type format access no limitations updates 2 per year con.onl no con.mag yes con.flp yes con.elm yes con.pap no acc.onl no acc.mag no acc.flp no acc.elm no acc.pap yes byt.all 12000000 byt.pri - ent.pri 2000 comment - /// entry BCAD number 10082 history gk 02/28/90 initial entry from questionnaire status response res.nam Dr. Anita Crafts-Lighty res.add Biocommerce Data Ltd. Prudential Buildings, 95 High St Slough SL1 1DH U.K. res.tel [011-44] 753-74201 res.net - gen.nam Mrs E. Reed gen.add Biocommerce Data Ltd. Prudential Buildings, 95 High St Slough SL1 1DH U.K. gen.tel [011 44] 753 511777 gen.net - con.nam Mrs E. Reed con.add Biocommerce Data Ltd. Prudential Buildings, 95 High St Slough SL1 1DH U.K. con.tel [011 44] 753 511777 con.net - acc.nam Mrs E. Reed acc.add Biocommerce Data Ltd. Prudential Buildings, 95 High St Slough SL1 1DH U.K. acc.tel [011 44] 753 511777 acc.net - name.now BioCommerce Abstracts and Directory nam.alt Abstracts in Biocommerce; Biocommerce Abstracts nam.bad - source newsletters, newspapers, scientific journals, magazines and; press releases.; profiles prepared from questionnaires and company literature funding BioCommerce Data Ltd. citation - charter BCAD is a worldwide news indexing service and international directory focussing on the commercial applications of biotechnology. The database is available through Dialog and Data-Star cross.name - data.pri abstracts [magazines]; abstracts [newsletters]; abstracts [newspapers]; abstracts [scientific journals]; abstracts [press releases]; profiles [from company literature]; profiles [from questionnaires] data.sec literature citations [names of organisations]; index terms [organisations] hardware Prime 2350 op.sys - dbms ADLIB language - software - format flatfile: line type format access available through Dialog Information Services updates twice monthly con.onl - con.mag - con.flp - con.elm - con.pap - acc.onl yes acc.mag yes acc.flp no acc.elm no acc.pap yes byt.all - byt.pri - ent.pri 46300 comment BCAD is a database concerned with the business aspect of biotechnology and the commercial applications of biological sciences. The file includes two types of records: abstract records and company profile records. /// entry BIOSISCONN number 10069 history jl 11/03/89 initial entry gk 02/15/90 updated from returned questionnaire status response res.nam - res.add - res.tel - res.net - gen.nam BIOSIS Marketing Section gen.add BIOSIS 2100 Arch Street Philadelphia, PA 19103-1399 U.S.A. gen.tel (215) 587-4800 gen.net - con.nam - con.add - con.tel - con.net - acc.nam Marketing Section acc.add BIOSIS 2100 Arch Street Philadelphia, PA 19103-1399 U.S.A. acc.tel (215) 587-4800 or 800-523-4806 acc.net - name.now BIOSIS Connection nam.alt - nam.bad - source - funding - citation - charter BIOSIS Connection is an online end-user system seeking to provide life science researchers with a variety of life science research databases and professional services. cross.name - data.pri [life science] databases; [life science] literature citations; [AIDS] literature citations data.sec - hardware IBM 3093 op.sys CICS/ XA dbms in house language - software - format - access available through BIOSIS updates weekly - semi-annually con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl yes acc.mag no acc.flp no acc.elm no acc.pap yes byt.all - byt.pri - ent.pri - comment - /// entry BIOSISP number 10031 history fm 05/18/87 initial entry fm 05/22/87 sent questionnaire to M.Kelly fm 08/04/87 response received from R.Howey gk 02/20/90 updated from returned questionnaire status response res.nam Peg Costandino res.add BIOSIS 2100 Arch Street Philadelphia, PA 19103-1399 U.S.A. res.tel (215) 587-4834 res.net - gen.nam BIOSIS Marketing Section gen.add BIOSIS 2100 Arch Street Philadelphia, PA 19103-1399 U.S.A. gen.tel (215) 587-4800 gen.net - con.nam - con.add - con.tel - con.net - acc.nam Marketing Section acc.add BIOSIS 2100 Arch Street Philadelphia, PA 19103-1399 U.S.A. acc.tel (215) 587-4800 or 800-523-4806 acc.net - name.now BIOSIS Previews nam.alt - nam.bad - source [biological] literature (serials, books, monographs, journal articles, reviews, conference proceedings) funding lease and usage charges citation - charter BIOSIS Previews is the machine readable version of citations from Biological Abstract (BA) and BA/RRM (reviews, reports, and meetings). Drawn from over 9,000 sources, BIOSIS Previews reports research in the entire life sciences area. cross.name - data.pri [biological] literature abstracts; [biological] literature citations data.sec [biological] index terms hardware IBM 4381 mainframe op.sys IBM OS/VS1 dbms in-house language PL/1 software - format - access BIOSIS is available on Dialog STN, Data Star, ESA and BRS updates weekly con.onl no con.mag no con.flp no con.elm no con.pap yes acc.onl yes acc.mag yes acc.flp yes acc.elm no acc.pap yes byt.all - byt.pri - ent.pri 7000000 comment Online access to BIOSIS Previews is available on the Dialog STN, Data-Star, ESA and BRS networks. /// entry BKS number 10078 history jl 12/04/89 initial entry gk 02/27/90 updated entry from returned questionnaire status response res.nam Dr. Anita Crafts-Lighty res.add Biocommerce Data Ltd. Prudential Buildings, 95 High St Slough SL1 1DH U.K. res.tel [011-44] 753-74201 res.net - gen.nam Dr. Anita Crafts-Lighty gen.add Biocommerce Data Ltd. Prudential Buildings, 95 High St Slough SL1 1DH U.K. gen.tel [011-44] 753-74201 gen.net - con.nam Dr. Sunil Nandi con.add British Library Biotechnology Information Service SRIS, 25 Southampton Bldgs. Holborn London WC2A 1AW U.K. con.tel 01-323-7293 con.net - acc.nam Dr. Anita Crafts-Lighty acc.add Biocommerce Data Ltd. Prudential Buildings, 95 High St Slough SL1 1DH U.K. acc.tel [011-44] 753-74201 acc.net - name.now Biotech Knowledge Sources nam.alt BKS nam.bad - source publishers' catalogues; press releases; literature; cataloging in publication data funding British Library Biotechnology Information Services; Biocommerce Data Ltd. citation - charter BKS is a comprehensive monthly listing of new books, journals, market research reports and other publications in the field of biotechnology. It also lists forthcoming conferences, courses and exhibitions. cross.name - data.pri conferences data.sec authors/editors [books]; publishers; organizers [conferences] hardware IBM PC/AT op.sys MS DOSS dbms TEXTO language - software - format journal format access no limitations updates monthly con.onl yes con.mag yes con.flp no con.elm no con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm no acc.pap yes byt.all - byt.pri - ent.pri - comment - /// entry BMCD number 10093 history gk 05/26/90 initial entry status response res.nam Joan Sauerwein res.add NIST 221/A323 Gaithersburg, MD 20899 U.S.A. res.tel (301) 975-2208 res.net - gen.nam Joan Sauerwein gen.add NIST 221/A323 Gaithersburg, MD 20899 U.S.A. gen.tel (301) 975-2208 gen.net - con.nam - con.add - con.tel - con.net - acc.nam - acc.add - acc.tel - acc.net - name.now NIST/CARB Biological Macromolecule Crystallization Database nam.alt BMCD nam.bad - source literature funding - citation - charter BMCD contains information on the crystallization conditions for 1025 crystal forms of 616 biological macromolecules. cross.name - data.pri protein [crystallization conditions] data.sec literature citations [crystallization] hardware IBM PC op.sys - dbms - language - software - format - access no limitation updates .75 per year con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl no acc.mag no acc.flp yes acc.elm no acc.pap no byt.all 2700000 byt.pri - ent.pri 1025 comment - /// entry BMR number 10083 history gk 03/19/90 initial entry from returned questionnaire status response res.nam Beverly Seavey res.add Dept. of Biochemistry NMRFAM 420 Henry Mall Madison, Wisconson 53706 USA res.tel (608) 262-8528 res.net beverly@ai.wisc.edu gen.nam Beverly Seavey gen.add Dept. of Biochemistry NMRFAM 420 Henry Mall Madison, Wisconson 53706 USA gen.tel (608) 262-8528 gen.net beverly@ai.wisc.edu con.nam Beverly Seavey con.add Dept. of Biochemistry NMRFAM 420 Henry Mall Madison, Wisconson 53706 USA con.tel (608) 262-8528 con.net beverly@ai.wisc.edu acc.nam Beverly Seavey acc.add Dept. of Biochemistry NMRFAM 420 Henry Mall Madison, Wisconson 53706 USA acc.tel (608) 262-8528 acc.net beverly@ai.wisc.edu name.now BioMagRes nam.alt - nam.bad - source journal articles; direct submissions funding NIH/Library of Medicine citation Ulrich,E., Markley,J., Kyogoku,Y. (1989) Creation of Nuclear Magnetic Resonance Data Repository and Literature Base. 2, pp. 23-37. charter BMR is an archival repository for NMR spectroscopic data on proteins. This sequence-related database will contain primary NMT data and chemical, structural, and dynamic information derived from NMR data. cross.name Chem Abs; PIR; Brokhaven; GENBANK; EMBL data.pri sequences; NMR [coupling constants]; NMR [NOEs]; NMR [shift assignments] data.sec 3D coordinates; NMR [experimental conditions] hardware IBM PS/2 model 80; Silicon Graphics 4D220 workstation op.sys Xenix; Unix dbms Oracle, Ingress language C software - format flatfile format similar to PIR; also files acceptable to any RDBMS loader access no limitations updates continual incremental updates con.onl no con.mag yes con.flp yes con.elm yes con.pap yes acc.onl no acc.mag yes acc.flp yes acc.elm yes acc.pap yes byt.all 16000 byt.pri - ent.pri 100 comment This database is currently under development and some of the above data flow items are not available. BMR is a beta test site for Oracle on the Silicon Graphics platform, so that version will be finalized at later date. /// entry BRD number 10002 history fm 04/07/87 initial entry cb 02/06/87 response received from V.Erdmann gk 03/30/90 updated entry from returned questionnaire status response res.nam Thomas Specht res.add Institut fur Biochemie-FB Chemie Otto-Hahn-Bau Thielallee 63 D-1000 Berlin 33 WEST GERMANY res.tel [011-49] 30-838-6404 res.net - gen.nam Dr. Volker Erdmann gen.add Institut fur Biochemie-FB Chemie Otto-Hahn-Bau Thielallee 63 D-1000 Berlin 33 WEST GERMANY gen.tel [011-49] 30-838-6002 gen.net - con.nam Thomas Specht con.add Institut fur Biochemie-FB Chemie Otto-Hahn-Bau Thielallee 63 D-1000 Berlin 33 WEST GERMANY con.tel [011-49] 30-838-6404 con.net - acc.nam Thomas Specht acc.add Institut fur Biochemie-FB Chemie Otto-Hahn-Bau Thielallee 63 D-1000 Berlin 33 WEST GERMANY acc.tel [011-49] 30-838-6404 acc.net - name.now Berlin RNA Data Bank nam.alt 5S rRNA database; BRDB nam.bad - source literature [original] funding Deutsche Forschungisemeinschaff (Project Prof. Erdmann SFB9/B5); Free University of Berlin citation [1] Wolters,J., Erdmann,V. (1986) Collection of published 5S, 5.8S and 4.5S ribosomal RNA sequences. 14, pp. r1-r59. [2] Erdmann,V., Specht,T. (1990) Compilation of 5S tRNA Sequences and 5S rRNA Gene Sequences. (in press). charter BRD seeks to list all available published 5S rRNA sequence data. cross.name - data.pri [5S rRNA] nucleotide sequences data.sec [nucleotide sequence, rRNA] secondary structure hardware IBM PS2-70 op.sys DOS dbms SAGE language APL, C software - format flat text file: line type format access no limitations updates monthly con.onl no con.mag no con.flp yes con.elm no con.pap yes acc.onl no acc.mag no acc.flp yes acc.elm no acc.pap yes byt.all 1620000 byt.pri 80000 ent.pri 667 comment - /// entry CARBBANK number 10003 history fm 04/06/87 initial entry jl 03/10/88 changed entry from CSD to CARBBANK jl 07/08/88 updated network address cb 01/13/87 information received from P.Albersheim jl 11/06/89 updated with letter from D.Smith gk 02/20/90 updated from returned questionnaire status response res.nam Thomas Specht res.add Institut fur Biochemie-FB Chemie Otto-Hahn-Bau Thielallee 63 D-1000 Berlin 33 WEST GERMANY res.tel [011-49] 30-838-6404 res.net - gen.nam Dana Smith gen.add Complex Carbohydrate Research Center 220 Riverbend Road Athens, GA 30602 U.S.A. gen.tel (404) 542-4484 gen.net carbbank@uga.bitnet con.nam Dana Smith con.add Complex Carbohydrate Research Center 220 Riverbend Road Athens, GA 30602 U.S.A. con.tel (404) 542-4484 con.net carbbank@uga.bitnet acc.nam Dana Smith acc.add Complex Carbohydrate Research Center 220 Riverbend Road Athens, GA 30602 U.S.A. acc.tel (404) 542-4484 acc.net carbbank@uga.bitnet name.now Complex Carbohydrate Structural Database and CarbBank software nam.alt Carbohydrate Structure Database; Carbohydrate Sequence Database; CCSD nam.bad CSD source literature; other databases (viz., GENBANK and PIR) funding U.S. Department of Energy citation Doubet,S., Bock,K., Smith,D., Albersheim,P., Darvill,A. (1989) The Complex Carbohydrate Structure Database. 14, pp. 475-475. charter The purpose of CARBBANK is to collect and maintain a structural and citation database for complex carbohydrates cross.name - data.pri carbohydrate sequences data.sec [carbohydrate sequence] functional features; index terms; literature citations; [carbohydrate sequence] sources hardware PC Dos op.sys PC DOS based systems dbms in house language Pascal, C, Assembler software CarbBank (for searching and manipulating CCSD) format flat file format similar to CAS and compiled flat file for CARBANK access no limitations updates every six months con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl no acc.mag no acc.flp yes acc.elm no acc.pap no byt.all 2700000 byt.pri - ent.pri 3000 comment CarbBank program and CCSD can be purchased together or separately. /// entry CAS number 10030 history fm 05/18/87 initial entry fm 05/22/87 sent questionnaire to J.Harry fm 07/06/87 received response from S.Reed gk 05/01/90 updated entry from returned questionnaire status response res.nam Phyllis Fetzer res.add Chemical Abstracts Service P.O. Box 3012 Columbus, OH 43210 U.S.A. res.tel (614) 447-3600 ex2870 res.net - gen.nam CAS Customer Service gen.add Chemical Abstracts Service P.O. Box 3012 Columbus, OH 43210 U.S.A. gen.tel (800) 848-6538 gen.net - con.nam Dr. David Weisgerber con.add Dept. 50 Chemical Abstracts Service P.O. Box 3012 Columbus, OH 43210 U.S.A. con.tel (614) 477-3600 ex. 3640 con.net - acc.nam J. McDougal acc.add Dept. 86 Chemical Abstracts Service P.O. Box 3012 Columbus, OH 43210 U.S.A. acc.tel (614) 447-3600 ex. 2008 acc.net - name.now CAS ONLINE nam.alt CASOL nam.bad - source [chemical] literature (Chemical Abstracts, a weekly publication) funding CAS is a self-supporting division of the non-profit American Chemical Society, chartered by the U.S. Congress in the public interest. citation - charter This service furnishes English language abstracts of scientific literature, bibliographic citations, substance related information and index entries from Chemical Abstracts. cross.name BIOSISP; BIOSISP; MEDLINE; NTIS data.pri [chemical] literature abstracts; [chemical] literature citations data.sec [chemical] index terms hardware (not public information) op.sys (not public information) dbms in-house system language single command language software - format Standard Distribution Format (similar to GENBANK) access limitations include license and use fees updates biweekly con.onl no con.mag yes con.flp no con.elm no con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm yes acc.pap yes byt.all 125000000000 byt.pri - ent.pri - comment - /// entry CASORF number 10051 history fm 09/03/87 initial entry fm 09/03/87 received response from C.Brenner gk 05/01/90 updated entry from returned questionnaire status response res.nam Phyllis Fetzer res.add Chemical Abstracts Service P.O. Box 3012 Columbus, OH 43210 U.S.A. res.tel (614) 447-3600 ex2870 res.net - gen.nam CAS Customer Service gen.add Chemical Abstracts Service P.O. Box 3012 Columbus, OH 43210 U.S.A. gen.tel (800) 848-6538 gen.net - con.nam Dr. David Weisgerber con.add Dept. 50 Chemical Abstracts Service P.O. Box 3012 Columbus, OH 43210 U.S.A. con.tel (614) 477-3600 ex. 3640 con.net - acc.nam J. McDougal acc.add Dept. 86 Chemical Abstracts Service P.O. Box 3012 Columbus, OH 43210 U.S.A. acc.tel (614) 447-3600 ex. 2008 acc.net - name.now CAS ONLINE Registry File nam.alt REG File nam.bad - source other database (CAS ONLINE) funding CAS is a self supporting division of the non-profit American Chemical Society, chartered by the U.S. Congress in the public interest citation - charter The REGISTRY FILE is a chemical structure and dictionary database that contains more than 10 million unique substance records identified by Chemical Abstracts Service (CAS). Records in the file each contain the CAS Registry Number, CA index name and commonly used synonyms, a structure diagram, and molecular formula, all of which are searchable or displayable. Also displayable are: the 10 most recent documents citing the substance since 1967, an indication of the total number of citations to the substance in the CA file, and the occurrence of a reference(s) in the CAOLD File, and the presence of calculated 3D coordinates, if applicable. cross.name CAS; BIOSISP; MEDLINE data.pri [chemical] substances data.sec index terms; [chemical] literature citations; molecular structure [chemical representations]; molecular formulae hardware (not public information) op.sys (not public information) dbms in-house system language single command language software - format Standard Distribution Format, similar to GENBANK access - updates updated weekly with 7,000-14,000 new records con.onl no con.mag yes con.flp no con.elm no con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm no acc.pap yes byt.all 72500000000 byt.pri - ent.pri 10000000 comment The fields byt.all and byt.pri are proprietary information. /// entry CATGENE number 10072 history jl 11/28/89 initial entry gk 03/06/90 updated entry from returned questionnaire status response res.nam Dr. Andrew T. Lloyd res.add Genetics Department University of Newcastle upon Tyne Newcastle NE1 7RU U.K. res.tel - res.net A.T.Lloyd@uk.ac.newcastle gen.nam Tetrahedron Publications gen.add Tetrahedron Publications 37 Cheltenham Terrace Newcastle NE6SHR U.K. gen.tel 091-265-9228 gen.net - con.nam - con.add - con.tel - con.net - acc.nam Tetrahedron Publications acc.add Tetrahedron Publications 37 Cheltenham Terrace Newcastle NE6SHR U.K. acc.tel 091-265-9228 acc.net - name.now Domestic Cat Gene Frequencies: a catalogue and bibliography nam.alt Catgene; Cat*alog nam.bad - source - funding none citation Lloyd,A., Todd,N. Tetrahedron Publications, Newcastle upon Tyne,. charter CATGENE contains gene frequency data for up to 11 (mainly coat color) loci from more than 360 populations of domestic cats scattered all over the globe. cross.name - data.pri [domestic cat] gene frequencies data.sec [cat gene frequency distribution] statistical analysis hardware Amstrad 1512 micro op.sys MS DOS dbms - language - software simulation for three point test crosses format - access no limitations (2.50 pounds sterling or US$4) updates irregularly con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl no acc.mag no acc.flp yes acc.elm no acc.pap yes byt.all 37760 byt.pri - ent.pri 360 comment The booklet has comment and preliminary statistical analysis of the gene frequency distributions, papers, etc. in addition to the database itself. The floppy disk and e-mail version contain only the database. For booklet orders from the Americas, write: N.B. Todd, Carnivore Genetics Research Center, 26 Walnut Place, Newtonville, MA, 02160, U.S.A. /// entry CCD number 10039 history fm 06/10/87 initial entry fm 06/11/87 sent questionnaire to O.Kennard gk 02/20/90 updated from returned questionnaire status response res.nam Dr. Olga Kennard res.add C.C.D.C. University Chemical Laboratory Lensfield Road Cambridge CB2 1EW U.K. res.tel [011-44] 223-336409 res.net - gen.nam Dr. Olga Kennard gen.add C.C.D.C. University Chemical Laboratory Lensfield Road Cambridge CB2 1EW U.K. gen.tel [011-44] 223-336409 gen.net - con.nam Dr. Olga Kennard con.add C.C.D.C. University Chemical Laboratory Lensfield Road Cambridge CB2 1EW U.K. con.tel [011-44] 223-336409 con.net - acc.nam Dr. Olga Kennard acc.add C.C.D.C. University Chemical Laboratory Lensfield Road Cambridge CB2 1EW U.K. acc.tel [011-44] 223-336409 acc.net - name.now Cambridge Structural Database nam.alt Cambridge Database nam.bad - source scientific literature; direct submissions funding lease of database and software citation [1] ,. (1983) Systematic Analysis of Structural Data as a Research Technique in Organic Chemistry. 16, pp. 146-153. [2] Allen,F., Kennan,O., Taylor,R. (1983) Systematic Analysis of Structural Data as a Research Technique in Organic Chemistry. 16, pp. 146-153. charter CCD's goals are the maintenance, evaluation and distribution of the database, development of software for search, display and analysis of the contents of CSD, and the scientific utilisation of the CSD for research purposes cross.name - data.pri [small molecule] atomic coordinates data.sec - hardware - op.sys - dbms in house language - software in house (for dbms; written in fortran 77) format - access - updates every 6 months con.onl no con.mag yes con.flp no con.elm no con.pap no acc.onl yes acc.mag yes acc.flp no acc.elm no acc.pap no byt.all 15000000 byt.pri - ent.pri 85000 comment - /// entry CGC number 10054 history jl 01/06/88 initial entry: sent questionnaire to Dr. Mark Edgley jl 02/01/88 received questionnaire gk 05/20/90 updated entry from returned questionnaire status response res.nam Dr. Mark Edgley res.add 110 Tucker Hall Univ. of Missouri Columbia, MO 65211 U.S.A. res.tel (314) 882-7384 res.net bioscgc@umcvmb.bitnet gen.nam Dr. Mark Edgley gen.add 110 Tucker Hall Univ. of Missouri Columbia, MO 65211 U.S.A. gen.tel (314) 882-7384 gen.net bioscgc@umcvmb.bitnet con.nam Dr. Mark Edgley con.add 110 Tucker Hall Univ. of Missouri Columbia, MO 65211 U.S.A. con.tel (314) 882-7384 con.net bioscgc@umcvmb.bitnet acc.nam Dr. Mark Edgley acc.add 110 Tucker Hall Univ. of Missouri Columbia, MO 65211 U.S.A. acc.tel (314) 882-7384 acc.net bioscgc@umcvmb.bitnet name.now Caenorhabditis Genetics Center nam.alt CGC nam.bad - source field research; literature funding National Institutes of Health citation - charter CGC seeks to list C. elegans strains with genetic map data and bibliographic information. cross.name - data.pri organisms [C. elegans strains] data.sec [C. elegans] genetic maps; literature citations hardware IBM PC/AT op.sys DOS 3.2 dbms dBASEIII Plus language - software - format sdf or delimited access available at no cost to C.elegans researchers, to others as deemed appropriate. updates every six months con.onl no con.mag no con.flp yes con.elm yes con.pap yes acc.onl no acc.mag no acc.flp yes acc.elm yes acc.pap yes byt.all 2882718 byt.pri 1336020 ent.pri 1350 comment Electronic mail contributions can made via Bitnet or Internet. /// entry CSRS number 10004 history cb 01/22/87 response received from R.Reddy fm 04/06/87 initial entry gk 04/23/90 updated entry from returned questionnaire status response res.nam Dr. Ram Reddy res.add Department of Pharmacology Baylor College of Medicine Houston, TX 77030 U.S.A. res.tel (713) 798-7906 res.net - gen.nam Dr. Ram Reddy gen.add Department of Pharmacology Baylor College of Medicine Houston, TX 77030 U.S.A. gen.tel (713) 798-7906 gen.net - con.nam Dr. Ram Reddy con.add Department of Pharmacology Baylor College of Medicine Houston, TX 77030 U.S.A. con.tel (713) 798-7906 con.net - acc.nam Dr. Ram Reddy acc.add Department of Pharmacology Baylor College of Medicine Houston, TX 77030 U.S.A. acc.tel (713) 798-7906 acc.net - name.now Compilation of Small RNA Sequences nam.alt CSRS; snRNA Sequence Database; scRNA Sequence Database; u-snRNA Sequence Database nam.bad - source literature funding Part of research effort citation Reddy,R. (1986) Compilation of small RNA sequences. 14, pp. r61-r72. charter Through frequent contact with those working in the area, all sequences of small RNAs not directly involved in protein synthesis (e.g., snRNAs and scRNAs) are listed. cross.name - data.pri [small RNA] nucleotide sequences data.sec - hardware SPERRY PC op.sys - dbms Word Star (word processor) language - software - format similar to BRD access no limitations updates yearly con.onl no con.mag no con.flp yes con.elm no con.pap no acc.onl no acc.mag no acc.flp yes acc.elm no acc.pap yes byt.all - byt.pri - ent.pri - comment - /// entry CURRCONTS number 10080 history jl 12/05/89 initial entry status no-response res.nam - res.add - res.tel - res.net - gen - gen.add - gen.tel - gen.net - con.nam - con.add - con.tel - con.net - acc.nam Fulfillment Services acc.add Institute for Scientific Information 3501 Market St. Philadelphia, PA 19104 U.S.A. acc.tel (800)-523-1850 ex 1483 or (215)-386-0100 acc.net - name.now Current Contents(R) nam.alt - nam.bad - source life science journals funding - citation - charter Current Contents(R) is a comprehensive listing of the contents pages of over 1200 of leading life sciences journals. cross.name - data.pri literature abstracts [life sciences] data.sec - hardware - op.sys - dbms - language - software - format - access no limitations updates weekly con.onl - con.mag - con.flp - con.elm - con.pap - acc.onl - acc.mag - acc.flp yes acc.elm - acc.pap yes byt.all - byt.pri - ent.pri - comment Current Contents is also available in a 600 journal version. /// entry CUTG number 10005 history cb 01/28/87 response received from T.Ikemura fm 04/06/87 initial entry gk 02/27/90 updated from returned questionnaire status response res.nam Dr. Toshimichi Ikemura res.add National Institute of Genetics Mishima, Shizuoka 411 JAPAN res.tel [011-81] 559-75-0771 ext. 643 res.net tikemura@niguts.nig.ac.jp gen.nam Dr. Toshimichi Ikemura gen.add National Institute of Genetics Mishima, Shizuoka 411 JAPAN gen.tel [011-81] 559-75-0771 ext. 643 gen.net tikemura@niguts.nig.ac.jp con.nam Dr. Toshimichi Ikemura con.add National Institute of Genetics Mishima, Shizuoka 411 JAPAN con.tel [011-81] 559-75-0771 ext. 643 con.net tikemura@niguts.nig.ac.jp acc.nam Dr. Toshimichi Ikemura acc.add National Institute of Genetics Mishima, Shizuoka 411 JAPAN acc.tel [011-81] 559-75-0771 ext. 643 acc.net tikemura@niguts.nig.ac.jp name.now Codon Usage Tabulation from GENBANK nam.alt CUTG nam.bad - source other database (GENBANK) funding National Institute of Genetics (Japan) citation [1] Maruyama,T., Gojobori,T., Aota,S., Ikemura,T. (1986) Codon usage tabulated from the GenBank genetic sequence data. 14, pp. r151-r197. [2] Wads,K., Aota,S., Tsuchiya,R., Ishibashi,F., Gojobori,T., Ikemura,T. (1990) Codon usage tabulated from the GenBank Genetic Sequence Data. 18 sup, (in press). charter CUTG is a tabulation of codon usages in all available genes from GENBANK. cross.name - data.pri codon usage data.sec [GENBANK] cross-references hardware M380 Q/system V op.sys UNIX system V dbms in-house language C software - format - access no limitations updates every six months con.onl yes con.mag yes con.flp yes con.elm no con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm no acc.pap yes byt.all 5200000 byt.pri 19000000 ent.pri 11415 comment - /// entry DBIR number 10053 history jl 12/04/87 sent questionnaire to D.Benson who forwarded it jl 01/18/88 initial entry jl 08/28/88 received questionnaire from K.Arnett gk 06/06/90 updated entry from returned questionnaire status response res.nam Carole Brown res.add A.T.C.C. 12301 Parklawn Dr. Rockville, MD 20852 U.S.A. res.tel (301) 231-5528 res.net KA3@NIHCU.BITNET gen.nam Carole Brown gen.add A.T.C.C. 12301 Parklawn Dr. Rockville, MD 20852 U.S.A. gen.tel (301) 231-5528 gen.net KA3@NIHCU.BITNET con.nam Carole Brown con.add A.T.C.C. 12301 Parklawn Dr. Rockville, MD 20852 U.S.A. con.tel (301) 231-5528 con.net KA3@NIHCU.BITNET acc.nam Carole Brown acc.add A.T.C.C. 12301 Parklawn Dr. Rockville, MD 20852 U.S.A. acc.tel (301) 231-5528 acc.net KA3@NIHCU.BITNET name.now Directory of Biotechnology Information/Resources nam.alt DBIR nam.bad - source personal contact; direct submission funding National Library of Medicine citation - charter DBIR describes information resources for biotechnology and identifies individuals to contact for more detailed information. It includes resources such as biotechnology centers; culture collections; other databases; electronic bulletin boards; networks dealing with biotechnology data; biotechnology journals; organizations specializing in collecting and disseminating biotechnology information; selected monographs, reviews and compilations of other information resources which focus on biotechnology; and nomenclature committees established to standardize the terminology used in all areas of biotechnology. cross.name - data.pri [biotechnology] databases data.sec database access information; database characteristics; index terms; database maintenance [hardware]; database maintenance [software] hardware Data General S280 Minicomputer op.sys MIIS dbms TOXNET system; ELHILL system language MIIS programming language; software - format - access no limitation updates 12/year con.onl no con.mag no con.flp no con.elm yes con.pap yes acc.onl yes acc.mag no acc.flp no acc.elm no acc.pap no byt.all - byt.pri - ent.pri - comment DBIR welcoms any information about organizations, databases, publications, etc. which are relevant to the project. /// entry DCT number 10041 history fm 06/19/87 electronic mail message received on database fm 06/19/87 initial entry fm 07/08/87 sent questionnaire to M.Ashburner jl 12/09/87 additional info added from e-mail message of 7/7/87 gk 02/26/90 updated from returned questionnaire status response res.nam Dr. Michael Ashburner res.add Department of Genetics Univ. of Cambridge Cambridge U.K. res.tel [011-44] 223-333-969 res.net ma11@ck.ac.cam.phx gen.nam Dr. Michael Ashburner gen.add Department of Genetics Univ. of Cambridge Cambridge U.K. gen.tel [011-44] 223-333-969 gen.net ma11@ck.ac.cam.phx con.nam Dr. Michael Ashburner con.add Department of Genetics Univ. of Cambridge Cambridge U.K. con.tel [011-44] 223-333-969 con.net ma11@ck.ac.cam.phx acc.nam Dr. Michael Ashburner acc.add Department of Genetics Univ. of Cambridge Cambridge U.K. acc.tel [011-44] 223-333-969 acc.net ma11@ck.ac.cam.phx name.now Drosophila Codon Tables nam.alt DCT nam.bad - source other databases (EMBL, GENBANK, PIR); personal communication funding - citation - charter - cross.name - data.pri [Drosophila] codon usage; [transposable element ORF] nucleotide sequences; [host gene] nucleotide sequences data.sec [database] cross-references; [transposable element ORF] base composition; [host gene] base composition hardware IBM 30840 op.sys - dbms - language - software - format - access no limitations (for research) updates whenever enough new data warrants the work con.onl no con.mag yes con.flp yes con.elm yes con.pap no acc.onl no acc.mag no acc.flp no acc.elm yes acc.pap yes byt.all - byt.pri - ent.pri - comment - /// entry DDBJ number 10006 history cb 01/30/87 response received from T.Maruyama fm 04/06/87 initial entry jl 02/05/88 changed con.nam from Maruyama to Miyazawa gk 05/26/90 updataed entry from returned questionnaire status response res.nam Dr. Sanzo Miyazawa res.add Laboratory of Genetic Information Analysis National Institute of Genetics Mishima, Shizuoka 411 JAPAN res.tel [011-81] 559-75-0771 res.net sanzo.miyazawa@ddbj.nig.ac.jp gen.nam DNA Data Bank of Japan gen.add Laboratory of Genetic Information Analysis National Institute of Genetics Mishima, Shizuoka 411 JAPAN gen.tel - gen.net - con.nam DNA Data Bank of Japan con.add Laboratory of Genetic Information Analysis National Institute of Genetics Mishima, Shizuoka 411 JAPAN con.tel - con.net - acc.nam DNA Data Bank of Japan acc.add Laboratory of Genetic Information Analysis National Institute of Genetics Mishima, Shizuoka 411 JAPAN acc.tel - acc.net - name.now DNA Data Bank of Japan nam.alt DDBJ nam.bad - source literature; direct submissions funding Japanese government citation Miyazawa,S. (1990) DNA Data Bank of Japan: Present Status and Future Plans. 7, pp. 47-61. charter DDBJ is primarily concerned with covering DNA data produced in Japan and has close collaborative ties with GENBANK and EMBL. cross.name - data.pri nucleotide sequences data.sec [nucleotide sequence] functional features; index terms; [molecular biology] literature citations; taxonomic classification hardware Facom M380Q; Sun 4/390 op.sys UNIX (system V ); Sun OS 4.0 dbms FLAT language C software - format like GENBANK access no limitation updates 2/year con.onl yes con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp yes acc.elm yes acc.pap no byt.all 3700000 byt.pri 841236 ent.pri 495 comment - /// entry DIALOGMC number 10063 history jl 07/21/88 initial entry; entry made from brochure gk 05/01/90 updated entry from returned questionnaire status response res.nam Kathie Mulvey res.add Dialog Information Service, Inc. 3460 Hillview Ave. Palo Alto, CA 94304 U.S.A. res.tel (415) 858-3711 res.net - gen.nam Marketing Department gen.add Dialog Information Service, Inc. 3460 Hillview Ave. Palo Alto, CA 94304 U.S.A. gen.tel (800) 334-2564 gen.net - con.nam - con.add - con.tel - con.net - acc.nam - acc.add - acc.tel - acc.net - name.now Dialog Medical Connection nam.alt DMC nam.bad - source journals; reports; papers; other databases (BIOSIS, MEDLINE, CAS, SCISEARCH, EMBASE, COMPENDEX, NTIS etc); patents; government documents; books; conference proceedings funding Commercial online retrieval service citation - charter Dialog Medical Connection is a network information source composed of four libraries; Medical Reference Library, BioScience Library, Science/Technology Library and the General Reference Library. cross.name - data.pri literature citations data.sec abstracts hardware - op.sys - dbms - language - software - format - access users are subject to current Dialog terms and conditions updates monthly - weekly con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl yes acc.mag no acc.flp no acc.elm no acc.pap no byt.all - byt.pri - ent.pri 35000000 comment Dialog Medical Connection is a compilation of 28 databases. /// entry DRHPL number 10007 history cb 01/10/87 response received from D.Maglott fm 04/07/87 initial entry gk 02/06/90 updated from questionnaire status response res.nam Dr. Donna Maglott res.add A.T.C.C. 12301 Parklawn Dr. Rockville, MD 20852 U.S.A. res.tel (301) 231-5586 res.net dmaglott@helix.nih.gov gen.nam Dr. Donna Maglott gen.add A.T.C.C. 12301 Parklawn Dr. Rockville, MD 20852 U.S.A. gen.tel (301) 231-5586 gen.net dmaglott@helix.nih.gov con.nam Dr. Donna Maglott con.add A.T.C.C. 12301 Parklawn Dr. Rockville, MD 20852 U.S.A. con.tel (301) 231-5586 con.net dmaglott@helix.nih.gov acc.nam Dr. Donna Maglott acc.add A.T.C.C. 12301 Parklawn Dr. Rockville, MD 20852 U.S.A. acc.tel (301) 231-5586 acc.net dmaglott@helix.nih.gov name.now Database for the Repository of Human and Mouse Probes and Libraries nam.alt DRHPL; ATCC Probe Database nam.bad - source literature (including human gene mapping conference proceedings); personal communication; electronic transfers from Howard Hughes-supported genomic databases funding contract from NICHD & Research Resources citation - charter DRHPL maintains data on chromosomal assignment, RFLPs, literature references, distribution lists, and cross-references for the chromosome-specific libraries and human and mouse genomic and cDNA clones maintained by the Repository cross.name HGML; GDB data.pri [human cDNA] clones; [human genomic] clones; clones [chromosome specific libraries]; RFLPs data.sec clones [descriptions]; clones [distribution lists]; clones [library characterizations]; literature citations hardware Micro VaxII op.sys VMS 5.3 dbms RDB; Datatrieve; Rdv 3.0b language - software - format - access no limitations updates daily con.onl yes con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag no acc.flp no acc.elm no acc.pap yes byt.all 5000000 byt.pri 2000000 ent.pri 1200 comment The ent.pri figure is composed of 270 clones and 55 libraries. /// entry DROSO number 10033 history cb 04/23/87 information received from mail memo fm 05/18/87 initial entry fm 06/03/87 sent questionnaire to D.Lindsley jl 12/09/87 added more info from e-mail letter from D.Brutlag status no-response res.nam - res.add - res.tel - res.net - gen.nam Dr. Daniel Lindsley gen.add Department of Biology U.C.-San Diego La Jolla, CA 92093 U.S.A. gen.tel - gen.net - con.nam - con.add - con.tel - con.net - acc.nam - acc.add - acc.tel - acc.net - name.now Genetic Variations of Drosophila melanogaster nam.alt RED BOOK; Drosophila Bible nam.bad - source literature (book: "Genetic Variations of Drosophila melanogaster") funding National Library of Medicine citation - charter DROSO is a computer readable form of the book "Genetic Variations of Drosophila melanogaster" on BIONET with a program to search the book for keywords and find loci near any genetic region or other genetic marker. cross.name - data.pri - data.sec [D. melanogaster] chromosome rearrangements; [D. melanogaster] genetic mutations; [D. melanogaster non-chromosomal] phenotypes; organisms [D. melanogaster, wild-type strains] hardware - op.sys - dbms - language - software - format - access no limitations (except user must have access to BIONET) updates - con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl no acc.mag no acc.flp no acc.elm yes acc.pap no byt.all - byt.pri - ent.pri - comment Consult BIONET-NEWS bulletins 2,10,11,24 for complete information. DROSO can be accessed via BIONET. /// entry ECOLI number 10098 history gk 06/19/90 initial entry status response res.nam Dr. Akira Tsugita res.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN res.tel [011-81] 471-23-9777 res.net ex5292@jpnsut30.bitnet gen.nam Dr. Akira Tsugita gen.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN gen.tel [011-81] 471-23-9777 gen.net ex5292@jpnsut30.bitnet con.nam Dr. Akira Tsugita con.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN con.tel [011-81] 471-23-9777 con.net ex5292@jpnsut30.bitnet acc.nam Dr. Akira Tsugita acc.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN acc.tel [011-81] 471-23-9777 acc.net ex5292@jpnsut30.bitnet name.now E.Coli K12 Genome and Protein Database nam.alt E.Coli nam.bad - source literature [books]; literature [journals] funding Japanese government; research funds; donations citation - charter - cross.name PIR; EMBL; GENBANK data.pri nucleotide sequences; amino acid sequences data.sec gene name; annotation [protein]; gene [location]; nucleotide sequence [features] hardware VAX 11/750 op.sys VMS dbms in-house language Fortran software in-house (for dbms; written in Fortran) format - access no limitations updates 3 per year con.onl yes con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm no acc.pap no byt.all - byt.pri - ent.pri 335 comment - /// entry EMBL number 10008 history cb 11/01/86 questionnaire sent to G. Cameron cb 12/20/86 response received from G. Cameron cb 02/10/87 initial entry gk 03/09/90 updated entry from returned questionnaire status response res.nam P. Stoemr res.add EMBL Data Library European Molecular Biology Laboratory Postfach 10.2209 Heidelberg 6900 WEST GERMANY res.tel - res.net stoemr@embl.bitnet gen.nam EMBL Data Library gen.add European Molecular Biology Laboratory Postfach 10.2209 Heidelberg 6900 WEST GERMANY gen.tel [011-49] 6221-387-258 gen.net datalib@embl.bitnet con.nam EMBL Data Library Submissions con.add European Molecular Biology Laboratory Postfach 10.2209 Heidelberg 6900 WEST GERMANY con.tel [011-49] 6221-387-258 con.net datasub@embl.bitnet acc.nam EMBL Data Library acc.add European Molecular Biology Laboratory Postfach 10.2209 Heidelberg 6900 WEST GERMANY acc.tel [011-49] 6221-387-258 acc.net datalib@embl.bitnet name.now The EMBL Nucleotide Sequence Database nam.alt The EMBL Database; EMBL nam.bad - source literature; direct submissions; other databases (GENBANK, DDBJ) funding European Molecular Biology Laboratory; European Economic Community citation Hamm,G., Cameron,G. (1986) The EMBL data library. 14, pp. 5-9. charter EMBL seeks to collect, organize, document and make freely available the body of known nucleotide sequence data. cross.name - data.pri nucleotide sequences data.sec [nucleotide sequence] functional features; index terms; [molecular biology] literature citations; taxonomic classification hardware VAX op.sys VMS dbms GCG package; ORACLE RDBMS language - software ORACLE RDBMS (for dbms) format flat text file: line type format access no limitations updates continuously con.onl no con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm yes acc.pap no byt.all 75000000 byt.pri 3000000 ent.pri 31000 comment For a yearly subscriber fee, EMBL distributes the EMBL database and the SWISS-PROT database. /// entry EMBOPRO number 10067 history jl 10/27/89 initial entry status no-response res.nam - res.add - res.tel - res.net - gen.nam Dr. Rainer Stulich gen.add Dep't of Molecular Biophysics Zentralinstitut fur Molekularbiologie der Akademie der Wissenschaft der DDR Robert-Rossle-Strasse 10 Berlin-Buch 1115 EAST GERMANY gen.tel - gen.net - con.nam - con.add - con.tel - con.net - acc.nam Dr. Rainer Stulich acc.add Dep't of Molecular Biophysics Zentralinstitut fur Molekularbiologie der Akademie der Wissenschaft der DDR Robert-Rossle-Strasse 10 Berlin-Buch 1115 EAST GERMANY acc.tel - acc.net - name.now EMBOPRO nam.alt - nam.bad - source other database (EMBL) funding - citation Stulich,R., Rohde,K. (1989) EMBOPRO - an automatically generated protein sequence database. 5, pp. 15-18. charter EMBOPRO is a protein sequence database, automatically generated from the EMBL Data Library of nucleotide sequences. cross.name EMBL data.pri amino acid sequences data.sec [amino acid sequence] functional features; index terms; [EMBL] cross-references hardware Czech SM 52/12 op.sys - dbms - language - software - format flat text file: line type format (similar to EMBL) access no limitations updates every six weeks (same as EMBL) con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl no acc.mag yes acc.flp no acc.elm no acc.pap yes byt.all - byt.pri - ent.pri 9478 comment This entry is based on the CABIOS article on EMBOPRO and not on a completed questionnaire. /// entry ENZYME number 10087 history gk 04/23/90 initial entry status response res.nam Dr. Amos Bairoch res.add Departement de Biochimie Medicale C.M.U. 1 rue Michel Servet 1211 Geneva 4 SWITZERLAND res.tel [011-41] 22-61-84-92 res.net bairoch@cgecmu51.bitnet gen.nam Dr. Amos Bairoch gen.add Departement de Biochimie Medicale C.M.U. 1 rue Michel Servet 1211 Geneva 4 SWITZERLAND gen.tel [011-41] 22-61-84-92 gen.net bairoch@cgecmu51.bitnet con.nam Dr. Amos Bairoch con.add Departement de Biochimie Medicale C.M.U. 1 rue Michel Servet 1211 Geneva 4 SWITZERLAND con.tel [011-41] 22-61-84-92 con.net bairoch@cgecmu51.bitnet acc.nam Dr. Amos Bairoch acc.add Departement de Biochimie Medicale C.M.U. 1 rue Michel Servet 1211 Geneva 4 SWITZERLAND acc.tel [011-41] 22-61-84-92 acc.net bairoch@cgecmu51.bitnet name.now The ENZYME data bank nam.alt - nam.bad - source NC-IUB enzyme nomenclature; literature funding In house citation - charter ENZYME contains the following data for each type of characterized enzyme for which an EC number has been provided: EC number, names(recommended and alternative), catalytic activity, cofactors and cross-references to SWISS-PROT. cross.name SWISSPROT data.pri enzyme [catalytic activity]; enzymes [EC numbers] data.sec index terms hardware IBM PC/AT op.sys PC/ MS-DOSS dbms Text editor + inhouse-software language - software - format flat file access no limitations updates every three/four months con.onl no con.mag no con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm yes acc.pap no byt.all 400000 byt.pri 100000 ent.pri 3100 comment ENZYME is distributed along with SWISS-PROT by the EMBL, both on tape and on CD-ROM. /// entry EPD number 10070 history jl 11/06/89 initial entry gk 03/19/90 updated entry from returned questionnaire status response res.nam Dr. Philipp Bucher res.add Stanford University School of Medicine Stanford, CA 94305 U.S.A. res.tel (415) 723-9256 res.net bucher@gnomic.stanford.edu gen.nam Dr. Philipp Bucher gen.add Stanford University School of Medicine Stanford, CA 94305 U.S.A. gen.tel (415) 723-9256 gen.net bucher@gnomic.stanford.edu con.nam Dr. Philipp Bucher con.add Stanford University School of Medicine Stanford, CA 94305 U.S.A. con.tel (415) 723-9256 con.net bucher@gnomic.stanford.edu acc.nam EMBL Data Library acc.add European Molecular Biology Laboratory Postfach 10.2209 Heidelberg 6900 WEST GERMANY acc.tel [011-49] 6221-387-258 acc.net datalib@embl.bitnet name.now Eukaryotic Promoter Database nam.alt EPD nam.bad - source scientific literature funding - citation Bucher,P., Trifonov,E. (1986) Compilation and analysis of eukaryotic POL II promoter sequences. 14, pp. 10009-10026. charter published in the leading scientific journals of the field. EPD provides information on experimentally defined eukryotic promoters for which sequences are available but not necessarily annotated in the EMBL Data Library. It is the outcome of a critical evaluation of transcript-mapping and gene-expression data cross.name - data.pri nucleotide sequences [eukaryotic POL II promoter] data.sec index terms; [EMBL] cross-references; [eukaryotic POL II promoter sequence] literature citations hardware - op.sys - dbms - language - software - format line type format access no limitations updates every three months con.onl no con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm yes acc.pap no byt.all 228000 byt.pri 128000 ent.pri 722 comment EPD is not a nucleotide sequence database. It is a compilation of data that define the function of specific nucleotide sequences of the EMBL Data Library /// entry GBSOFT number 10028 history fm 04/23/87 received response from F.Lewitter fm 05/16/87 initial entry jl 01/08/88 updated with info from Yuki Abe at IG gk 07/20/90 updated entry from returned questionnaire status response res.nam Dr. David Benton res.add IntelliGenetics, Inc. 700 El Camino Real East Mountain View, CA 94040 U.S.A. res.tel (415) 962-7360 res.net benton@genbank.karyon.bio.net gen.nam Dr. Yuki Abe gen.add IntelliGenetics, Inc. 700 El Camino Real East Mountain View, CA 94040 U.S.A. gen.tel (415) 962-7364 gen.net genbank@genbank.bio.net con.nam GenBank Software Clearinghouse con.add IntelliGenetics, Inc. 700 El Camino Real East Mountain View, CA 94040 U.S.A. con.tel (415) 962-7364 con.net genbank@genbank.bio.net acc.nam Dr. Yuki Abe acc.add IntelliGenetics, Inc. 700 El Camino Real East Mountain View, CA 94040 U.S.A. acc.tel (415) 962-7364 acc.net genbank@genbank.bio.net name.now The GenBank Software Clearinghouse nam.alt - nam.bad - source Author's and distributor's complete standard form funding NIGMS citation - charter Contains information about software available for genetic sequence analysis for many kinds of computers as well as sequence handling time-sharing services. cross.name - data.pri program names [software] data.sec software [acquisition information]; software [functions]; software [system requirements] hardware Sun Workstation op.sys UNIX dbms SYBASE language - software - format line-type record access no limitations updates yearly con.onl no con.mag no con.flp no con.elm yes con.pap yes acc.onl yes acc.mag no acc.flp no acc.elm yes acc.pap yes byt.all 9005 byt.pri - ent.pri 40 comment The Software clearinghouse can be accessed via Telenet at an hourly charge rate. /// entry GC number 10052 history fm 09/11/87 response received from J.Schmidtke gk 03/30/90 updated entry from returned questionnaire status response res.nam Dr. Jorg Schmidtke res.add Institute of Human Genetics Free University Heubnerweg 6 Berlin D - 1000 West Germany res.tel [011-49] (0)30-3203-312 res.net - gen.nam Dr. Jorg Schmidtke gen.add Institute of Human Genetics Free University Heubnerweg 6 Berlin D - 1000 West Germany gen.tel [011-49] (0)30-3203-312 gen.net - con.nam Dr. Jorg Schmidtke con.add Institute of Human Genetics Free University Heubnerweg 6 Berlin D - 1000 West Germany con.tel [011-49] (0)30-3203-312 con.net - acc.nam Dr. Jorg Schmidtke acc.add Institute of Human Genetics Free University Heubnerweg 6 Berlin D - 1000 West Germany acc.tel [011-49] (0)30-3203-312 acc.net - name.now Gene Communications nam.alt - nam.bad - source literature funding self-supporting citation [1] Schmidtke,J., Cooper,D. (1987) A comprehensive list of cloned human DNA sequences. 15, pp. r1-r51. [2] Schmidtke,J., Cooper,D. (1989) Diagnosis of genetic disease using recombinant DNA. Second edition. 17, pp. r173-281. charter GC is intended as a guide to human genome clone availability and as a reference source to articles describing the original cloning procedure. It lists published reports of cDNA, genomic and synthetic clones comprising gene and pseudogene sequences, uncharacterized DNA segments and repetitive DNA elements. cross.name - data.pri [nucleotide sequence, cloned] literature citations data.sec - hardware IBM PC op.sys MS-DOS dbms dBASEIIIb language - software - format flat text files access no limitations updates every three months con.onl no con.mag no con.flp no con.elm no con.pap yes acc.onl no acc.mag no acc.flp yes acc.elm no acc.pap yes byt.all 222000 byt.pri 97000 ent.pri 3300 comment Gene Communications is published annually in the April Supplement of Nucleic Acids Research. Quarterly updates are directly available from Jorg Schmidkte for a small handling charge. GC welcomes any additions and/or corrections from interested parties. /// entry GDB number 10092 history gk 05/22/90 initial entry status response res.nam Dr. Richard Lucier res.add Welch Medical Library Baltimore, MD 21205 U.S.A. res.tel (301) 955-9705 res.net rl@welch.jhu.edu gen.nam Dr. Bonnie Maidak gen.add 1830 E. Monument St., Third Floor Welch Medical Library Baltimore, MD 21205 U.S.A. gen.tel (301) 955-9656 gen.net bonnie@welch.jhu.edu con.nam - con.add - con.tel - con.net - acc.nam Dr. Bonnie Maidak acc.add 1830 E. Monument St., Third Floor Welch Medical Library Baltimore, MD 21205 U.S.A. acc.tel (301) 955-9656 acc.net bonnie@welch.jhu.edu name.now Genome Data Base nam.alt GDB nam.bad - source Human Genome Mapping Workshops; GDB Editors; Medline funding Howard Hughs Medical Institute citation - charter The goal of GDB is to provide a genetic mapping and disease database to support the mapping and sequencing of the human genome. cross.name OMIM data.pri genes; probes; polymorphic information; literature citations data.sec - hardware Sun Microsystems op.sys Sun OS dbms Sybase language - software - format - access - updates continuously con.onl yes con.mag no con.flp no con.elm no con.pap no acc.onl yes acc.mag no acc.flp no acc.elm no acc.pap no byt.all 150000000 byt.pri - ent.pri - comment Development of the GDB began in September 1989, and the first release is expected in September 1990. /// entry GDN number 10060 history jl 04/23/88 received Vol. 1, 1 of GDN from J.Schmidtke jl 05/24/88 initial entry gk 03/30/90 updated entry from returned questionnaire status response res.nam Dr. Jorg Schmidtke res.add Institute of Human Genetics Free University Heubnerweg 6 Berlin D - 1000 West Germany res.tel [011-49] (0)30-3203-312 res.net - gen.nam Dr. Jorg Schmidtke gen.add Institute of Human Genetics Free University Heubnerweg 6 Berlin D - 1000 West Germany gen.tel [011-49] (0)30-3203-312 gen.net - con.nam Dr. Jorg Schmidtke con.add Institute of Human Genetics Free University Heubnerweg 6 Berlin D - 1000 West Germany con.tel [011-49] (0)30-3203-312 con.net - acc.nam Dr. Jorg Schmidtke acc.add Institute of Human Genetics Free University Heubnerweg 6 Berlin D - 1000 West Germany acc.tel [011-49] (0)30-3203-312 acc.net - name.now Gene Diagnosis Newsletter nam.alt - nam.bad - source literature funding self-supporting citation Schmidtke,J., Cooper,D. (1989) Diagnosis of genetic disease using recombinant DNA. Second edition. 83, pp. 307-334. charter GDN is a database of publications which detail the analysis and diagnosis of human inherited disease using recombinant DNA methods. It is intended to serve both the clinical geneticist and diagnostic laboratories as a quick and up-to-date reference source to current possibilities in this field. cross.name - data.pri [disease, human inherited] literature citations data.sec - hardware IBM - PC op.sys MS DOS dbms dBASEIIIb language - software - format line type with single line per entry access no limitations except subscriber fee updates every three months con.onl no con.mag no con.flp no con.elm no con.pap yes acc.onl no acc.mag no acc.flp yes acc.elm no acc.pap yes byt.all 241126 byt.pri - ent.pri 2056 comment - /// entry GENBANK number 10009 history cb 11/28/87 response received from F.Lewitter fm 04/07/87 initial entry jl 01/07/88 updated with IG info jl 02/03/88 updated with info from cb gk 06/19/90 updated entry from returned questionnaire status response res.nam Dr. Christian Burks res.add T-10, MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. res.tel (505) 667-6683 res.net cb%intron@lanl.gov gen.nam Dr. Yuki Abe gen.add IntelliGenetics, Inc. 700 El Camino Real East Mountain View, CA 94040 U.S.A. gen.tel (415) 962-7364 gen.net genbank@genbank.bio.net con.nam GenBank Data Submissions con.add Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. con.tel (505) 665-2177 con.net gb-sub%life@lanl.gov acc.nam Dr. Yuki Abe acc.add IntelliGenetics, Inc. 700 El Camino Real East Mountain View, CA 94040 U.S.A. acc.tel (415) 962-7364 acc.net genbank@genbank.bio.net nam.alt GenBank Database; GenBank; Los Alamos Sequence Library nam.bad Los Alamos Database; Goad Database source literature; direct submissions funding NIGMS; other government agencies citation [1] Moore,J., Benton,D., Burks,C. (1990) The GenBank Nucleic Acid Data Bank. 11:4, pp. 69-72. [2] Burks,C., Cinkosky,M., Gilna,P., Hayden,J., Abe,Y., Atencio,E., Barnhouse,S., Benton,D., Buenafe,C., Cumella,K., Davison,D., Emmert,D., Faulkner,M., Fickett,J., Fischer,W., Good,M., Horne,D., Houghton,K., Kelkar,P., Kelly,T., Kelly,M., King,M., Langan,B., Lauer,J., Lopez,N., Lynch,C., Lynch,J., Marchi,J., Marr,T., Martinez,F., McLeod,M., Medvick,P., Mishra,S., Moore,J., Munk,C., Mondragon,S., Nasseri,K., Nelson,W., Nguyen,T., Reiss,G., Rice,J., Ryals,J., Salazar,M., Stelts,S., Trujillo,B., Tomlinson,L., Weiner,M., Welch,F., Wiig,S., Yudin,K., Zins,L. (1990) Molecular Evolution: Computer Analysis of Protein and Nucleic Acid Sequences. 183, pp. 3-22. [3] Benton,D. (1990) Recent Changes in the GenBank On-line Service. 18(6), pp. 1517-1520. [4] Burks,C., et al. (1990) The GenBank Database: Current status and future directions. 183, pp. 3-22. charter GenBank is a U.S. government sponsored, internationally available collection of all reported nucleotide sequences, catalogued and annotated with functional physical and administrative context. cross.name HGML; Genome Database; EMBL Data Library; DNA Data Bank of Japan data.pri nucleotide sequences data.sec [nucleotide sequence] functional features; index terms; [molecular biology] literature citations; taxonomic classification hardware Sun Network op.sys UNIX; DOS; Macintosh OS dbms SYBASE language ISQL software in house (for accessing floppy disk files; written in C, Pascal) format flat text file: line type format access no limitations updates online system, daily; distributed version, quarterly con.onl yes con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp yes acc.elm yes acc.pap yes byt.all 70000000 byt.pri 42496000 ent.pri 35000 comment Figures given are for relese 64.0 /// /// entry GRIN number 10094 history gk 06/06/90 initial entry from returned questionnaire status response res.nam Jimmie Mowder res.add Bldg. 001, Rm 128 USDA-ARS-BA-PSI-GSL Barc West Beltsville, MD 21046 U.S.A. res.tel (301) 344-1666 res.net GRIN@UMDARS.UMD.EDU gen.nam Quinn Sinnott gen.add USDA-ARS-BA-PSI-GSL Barc West Beltsville, MD 21046 U.S.A. gen.tel (301) 344-1666 gen.net GRIN@UMDARS.UMD.EDU con.nam Quinn Sinnott con.add USDA-ARS-BA-PSI-GSL Barc West Beltsville, MD 21046 U.S.A. con.tel (301) 344-1666 con.net GRIN@UMDARS.UMD.EDU acc.nam Quinn Sinnott acc.add USDA-ARS-BA-PSI-GSL Barc West Beltsville, MD 21046 U.S.A. acc.tel (301) 344-1666 acc.net GRIN@UMDARS.UMD.EDU name.now Germplasm Resources Information Network nam.alt GRIN nam.bad - source - funding agency funds citation [1] Mowder,J., Stoner,A. (0) Record Keeping and Automation of the National Plant Germplasm System. 2, pp. 57-65. [2] Perry,M. The Germplasm Resources Information Network. 73, pp. 21-26. [3] Perry,M., Stoner,A., Mowder,J. (1986) Plant Germplasm Information Management System: Germplasm Resources Information Network. 23, pp. 57-66. charter The goal of GRIN is to record, identify, inventory and evaluate information on all of the 8000 species of plants in the National Plant Germplasm System. cross.name - data.pri accession [germplasm samples] data.sec inventory information; germplasm [evaluation information] hardware PRIME 9955 MOD II op.sys PRIMOS dbms PRIME language fortran 77 software - format network access no limitation updates 365/year con.onl yes con.mag yes con.flp yes con.elm no con.pap yes acc.onl yes acc.mag yes acc.flp yes acc.elm yes acc.pap yes byt.all 2200000000 byt.pri - ent.pri 385000 comment GRIN is a database of plant materials of agricultural, horticultural, medicinal, industrial and conservational use. The available information relates to the origin of the samples and their useful characteristics. /// entry HDB number 10010 history cb 01/28/87 response received from E.Asaki jl 12/13/87 address & new phone confirmed by e-mail jl 02/29/88 updated with info from E.Asaki gk 04/26/90 updated entry from returned questionnaire status response res.nam Catherine West res.add Hybridoma Data Bank A.T.C.C. 12301 Parklawn Dr. Rockville, MD 20852 U.S.A. res.tel (301) 231-5528 res.net zw4@nihcu.bitnet gen.nam Catherine West gen.add Hybridoma Data Bank A.T.C.C. 12301 Parklawn Dr. Rockville, MD 20852 U.S.A. gen.tel (301) 231-5528 gen.net zw4@nihcu.bitnet con.nam Catherine West con.add Hybridoma Data Bank A.T.C.C. 12301 Parklawn Dr. Rockville, MD 20852 U.S.A. con.tel (301) 231-5528 con.net zw4@nihcu.bitnet acc.nam Catherine West acc.add Hybridoma Data Bank A.T.C.C. 12301 Parklawn Dr. Rockville, MD 20852 U.S.A. acc.tel (301) 231-5528 acc.net zw4@nihcu.bitnet name.now Hybridoma Data Bank: A Data Bank on Immunoclones nam.alt HDB nam.bad - source literature; direct submission (laboratory investigators, commercial distributors) funding N.I.H. (NIAID, NIDR, NIGMS, NCI, NICHD, DRR); Food and Drug Administration; Canadian Medical Research Council; Canadian Natural Sciences and Engineering Research Council; Canadian Nat'l Research Council; Health & Welfare Canada; FRANCE: Centre Administratif des Alpes-Maritimes; CODATA; Commission of the European Communities citation Blaine,L. (1984) A data bank on cloned cell lines and their immunoreactive products. April, pp. 338-341. charter HDB seeks to collect and maintain information on hybridomas, cloned cell lines and monoclonal antibodies. cross.name - data.pri hybridomas; clones [immuno-]; [monoclonal] antibodies data.sec index terms; literature citations hardware IBM 370 op.sys MVS/XA dbms MICRO-IS language PL/I software - format flat text file: line type format access no limitations updates daily con.onl yes con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp yes acc.elm yes acc.pap yes byt.all - byt.pri - ent.pri 19900 comment There is a European node of HDB called CERDIC with the following contact address:Dr. louis Rechaussat CERDIC HDB 2 CAI - Solarex Avenue des Maurettes 06270 Villeneuve Loubet FRANCE There is a Japanese node of HDB at the RIKEN wiht the following contact address: Dr. Hideaki Sugawara, RIKEN, The Research Info. Section for Life Sciences, the Institute Physical & Chemical Research, 2-1 Hirosawa, Wako-shi Saitama-ken, JAPAN 351 /// entry HGIR number 10058 history jl 05/06/88 initial entry: sent questionnaire to D.Nelson jl 07/13/88 response received from D.Nelson gk 06/26/90 updated entry from returned questionnaire status response res.nam Dr. David Torney res.add MS K-710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. res.tel (505) 667-7510 res.net - gen.nam Dr. Jim Fickett gen.add T-10, MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. gen.tel (505) 665-0479 gen.net jwf@lanl.gov con.nam - con.add - con.tel - con.net - acc.nam - acc.add - acc.tel - acc.net - name.now Human Genome Information Resource nam.alt Physical Mapping Database nam.bad - source laboratory data funding Dep't of Energy citation - charter The HGIR is supporting the mapping efforts (Phase I) of the Human Genome Initiative and will provide a collection of results from physical mapping laboratory experiments in a form amenable to "ordering analysis". cross.name - data.pri restriction fragments; physical maps [data]; nucleotide sequences [probes] data.sec - hardware Sun 3/280; Sun 3/60 Workstation op.sys UNIX dbms SYBASE language ISQL software - format - access - updates - con.onl yes con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag no acc.flp no acc.elm no acc.pap no byt.all - byt.pri - ent.pri - comment The data in HGIR is not yet publicly available. /// entry HGMCR number 10034 history fm 05/18/87 initial entry fm 05/22/87 sent questionnaire to A.Greene fm 06/29/87 response received form R.Mulivor gk 04/30/90 updated entry from returned questionnaire status response res.nam Dr. Richard Mulivor res.add Coriell Inst. for Medical Research Copewood & Davis Streets Camden, NJ 08103 U.S.A. res.tel (609) 966-7377 res.net - gen.nam Dr. Richard Mulivor gen.add Coriell Inst. for Medical Research Copewood & Davis Streets Camden, NJ 08103 U.S.A. gen.tel (609) 966-7377 gen.net - con.nam Dr. Richard Mulivor con.add Coriell Inst. for Medical Research Copewood & Davis Streets Camden, NJ 08103 U.S.A. con.tel (609) 966-7377 con.net - acc.nam Dr. Richard Mulivor acc.add Coriell Inst. for Medical Research Copewood & Davis Streets Camden, NJ 08103 U.S.A. acc.tel (609) 966-7377 acc.net - name.now NIGMS Human Genetic Mutant Cell Repository Catalog of Cell Lines and DNA Samples nam.alt NIGMS-HGMCR nam.bad - source direct submission of patient information and case histories; literature describing cell cultures and patients; in-house generated characterizations funding N.I.H.-NIGMS citation - charter HGMCR provides descriptions of cell cultures and DNA samples available for genetic disease studies and gene mapping. cross.name OMIM data.pri [human] cell lines; DNA samples [human cell line]; somatic cell hybrids [human & rodent] data.sec cell lines [characteristics]; index terms hardware IBM System 36 op.sys SSP dbms RPG II language - software - format - access Catalog is available free of charge updates daily con.onl no con.mag no con.flp no con.elm no con.pap yes acc.onl no acc.mag no acc.flp no acc.elm no acc.pap yes byt.all 472000000 byt.pri - ent.pri 4600 comment - /// entry HGML number 10011 history cb 02/06/87 response received from I. Cohen fm 04/07/87 initial entry gk 06/21/90 updataed entry from returned questionnaire status response res.nam Dr. Iva Cohen res.add Human Gene Mapping Library 25 Science Park New Haven, CT 06511 U.S.A. res.tel (203) 786-5515 res.net genesic@yalevm.bitnet gen.nam Dr. Iva Cohen gen.add Human Gene Mapping Library 25 Science Park New Haven, CT 06511 U.S.A. gen.tel (203) 786-5515 gen.net genesic@yalevm.bitnet con.nam Dr. Iva Cohen con.add Human Gene Mapping Library 25 Science Park New Haven, CT 06511 U.S.A. con.tel (203) 786-5515 con.net genesic@yalevm.bitnet acc.nam Dr. Iva Cohen acc.add Human Gene Mapping Library 25 Science Park New Haven, CT 06511 U.S.A. acc.tel (203) 786-5515 acc.net genesic@yalevm.bitnet name.now The Howard Hughes Medical Institute Human Gene Mapping Library nam.alt HHMI/HGML; Yale Human Gene Map nam.bad - source literature; personal communication; results of collaborations funding Howard Hughes Medical Institute citation Cohen,I., Consiglio,D., Francke,U., Kidd,D., Miller,R., Pakstis,A., Partridge,C., Perretta,S., Ruddle,F., Track,R. (1987) Human gene map. Cold Spring Harbor Laboratory, Cold Spring Harbor, pp. 518-533. charter HGML seeks to list information relevant to human and comparative gene mapping. cross.name GENBANK; DRHPL; OMIM data.pri [human] DNA probes; [human] genetic maps; [molecular biology] literature citations; [human] RFLPs data.sec index terms hardware IBM 4361 op.sys VM/CMS dbms SPIRES (Stanford Public Information Retrieval System) language - software - format distributed data structured using several customized output formats access no limitations (for non-commercial purposes) updates daily con.onl no con.mag no con.flp no con.elm yes con.pap yes acc.onl yes acc.mag no acc.flp no acc.elm yes acc.pap yes byt.all - byt.pri - ent.pri - comment HGML consists of five linked databases - one each for map information, relevant literature, RFLP maps, DNA probes and contacts (researchers with information on data or materials). All five databases are cross-referenced, so data about a gene or probe of interest can be drawn from all five during the same search. /// entry HIVSSA number 10040 history fm 06/18/87 initial entry fm 06/18/87 sent questionnaire to G.Myers fm 06/22/87 response received from G.Myers jl 09/06/88 changed acc.elm and acc.nam entries status response res.nam Kersti MacInnes res.add T-10, MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. res.tel (505) 667-7510 res.net kam@lanl.gov gen.nam Kersti MacInnes gen.add T-10, MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. gen.tel (505) 667-7510 gen.net kam@lanl.gov con.nam Dr. Gerald Myers con.add T-10, MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. con.tel (505) 665-0480 con.net glm@env.lan.gov acc.nam Kersti MacInnes acc.add T-10, MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. acc.tel (505) 667-7510 acc.net kam@lanl.gov name.now HIV Sequence & Sequence Analysis Database nam.alt HIVSSA; AIDS Database; Human Retroviruses and Aids 1990 nam.bad - source private (i.e. confidential) prepublication information; literature; unpublished public information funding NIAID Interagency Agreement with Department of Energy citation Barnes,D. (1987) New database for AIDS research. 235, p. 634. charter - cross.name - data.pri [HIV] amino acid sequences; [HIV] nucleotide sequences; sequence alignments data.sec viruses [AIDS-related animal] hardware - op.sys Unix dbms Wide assortment of public domain analysis packages; UNIX programs language - software pept format flat text files: line type format access For qualified investigators - U.S. and 40 other countries updates quarterly con.onl no con.mag no con.flp yes con.elm yes con.pap yes acc.onl no acc.mag no acc.flp yes acc.elm no acc.pap yes byt.all 1500000 byt.pri 5000000 ent.pri 327 comment The database is available free of charge to qualified investigators and is also available to all medical schools in the U.S.A. The ent.pri figure is composed of 300 amino acid sequences and 27 nucleotide sequences. /// entry ILDIS number 10066 history jl 10/04/89 received ILDIS brochure in the mail jl 10/24/89 initial entry gk 03/01/90 updated entry from returned questionnaire status response res.nam Dr. Sue Hollis res.add Biology Dep't, Building 44 ILDIS Co-ordination Centre University of Southampton Southampton SO9 5NH U.K. res.tel [011-44] 703-581910 res.net 81:bio010 (Telecom Gold) gen.nam Dr. Sue Hollis gen.add Biology Dep't, Building 44 ILDIS Co-ordination Centre University of Southampton Southampton SO9 5NH U.K. gen.tel [011-44] 703-581910 gen.net 81:bio010 (Telecom Gold) con.nam - con.add - con.tel - con.net - acc.nam - acc.add - acc.tel - acc.net - name.now International Legume Database and Information Service nam.alt - nam.bad - source research groups worldwide funding - citation - charter The long term aims of the ILDIS Project are to provide: 1) a source of information for the development of all useful legume crops and legume products, especially in the arid zones and humid tropics; and 2) a focus for the study and conservation of legumes. cross.name - data.pri [name] legume data.sec [legume] literature citations; [tribe membership] legume; [geographical distribution] legume; legume [synonyms]; legume [vernacular names]; legume [life form]; legume [conservation status]; legume [economic importance]; legume [notes] hardware PC compatible microcomputer op.sys - dbms ALICE language - software - format - access - updates - con.onl no con.mag yes con.flp yes con.elm no con.pap yes acc.onl no acc.mag no acc.flp yes acc.elm no acc.pap yes byt.all 22000000 byt.pri - ent.pri 15734 comment The ILDIS Project also consists of a legume information service and a communications network for legume scientists. /// entry IUDSC number 10085 history gk 03/30/90 initial entry from returned questionnaire status response res.nam Kathy Matthews res.add Dept. of Biology Indiana University Bloomington, IN 47405 USA res.tel (812) 855-5782 res.net MATTHEWK@IUBACS gen.nam Kathy Matthews gen.add Dept. of Biology Indiana University Bloomington, IN 47405 USA gen.tel (812) 855-5782 gen.net MATTHEWK@IUBACS con.nam Kathy Matthews con.add Dept. of Biology Indiana University Bloomington, IN 47405 USA con.tel (812) 855-5782 con.net MATTHEWK@IUBACS acc.nam Kathy Matthews acc.add Dept. of Biology Indiana University Bloomington, IN 47405 USA acc.tel (812) 855-5782 acc.net MATTHEWK@IUBACS name.now Indiana University Drosophila Stock Center Stock List nam.alt IUDSC Stock List nam.bad - source Stock Center holdings and information from the user community funding Biological Research Resources Program of the NSF citation - charter The purpose of the database is to allow the curator to effectively maintain, build and distribute Drosophila collections. cross.name - data.pri [genotype] Drosophila data.sec breakpoints; [Drosophila] stock number; [Drosophila] tray number; [Drosophila] chromosome number hardware Zenith; IUBIO VAX op.sys DOS 3.3 dbms Paradox3 language - software - format Comma delimited ASCII files are distributed access no limitation updates weekly con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl yes acc.mag no acc.flp yes acc.elm no acc.pap yes byt.all 200000 byt.pri - ent.pri 3500 comment The database has only recently been posted on the IUBIO VAX and there may still be a few bugs. /// entry JIPIDB number 10044 history fm 06/11/87 initial entry fm 06/11/87 sent questionnaire to A.Tsugita fm 07/15/87 response received from A.Tsugita jl 01/13/88 reworked charter and data.sec categories gk 06/19/90 updated entry from returned questionnaire status response res.nam Dr. Akira Tsugita res.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN res.tel [011-81] 471-23-9777 res.net ex5292@jpnsut30.bitnet gen.nam Dr. Akira Tsugita gen.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN gen.tel [011-81] 471-23-9777 gen.net ex5292@jpnsut30.bitnet con.nam Dr. Akira Tsugita con.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN con.tel [011-81] 471-23-9777 con.net ex5292@jpnsut30.bitnet acc.nam Dr. Akira Tsugita acc.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN acc.tel [011-81] 471-23-9777 acc.net ex5292@jpnsut30.bitnet name.now Biological Database: Asian and Oceania Node of the International Protein Information Database nam.alt JIPIDB nam.bad - source literature (including enzyme handbooks) funding partially by Japanese government citation - charter The database is the extension of the sequence database (JIPIDS), and has two additional categories: Property (characterization) and Biological Activity, (containing two subcategories: description of the data and numerical value of the data). cross.name JIPIDS data.pri [protein] molecular biological activity data.sec [database] cross-references; enzymes [cofactor]; protein [organization]; protein [sources]; protein [function]; protein [optimal PH]; amino acid sequences hardware VAX 11/750 op.sys VMS dbms in-house language FORTRAN software - format an extended format from the standardized CODATA format access - updates - con.onl yes con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm no acc.pap no byt.all - byt.pri - ent.pri 678 comment JIPIDB is correlated with Enzyme database (JIPIDE), Substrate database (JIPIDU), Electron Carrier and Oxygen Carrier Protein database /// entry JIPIDM number 10045 history - status defunct res.nam - res.add - res.tel - res.net - gen - gen.add - gen.tel - gen.net - con.nam - con.add - con.tel - con.net - acc.nam - acc.add - acc.tel - acc.net - name.now NMR Database on Biopolymers: Asian and Oceania Node of the International Protein Information Database nam.alt - nam.bad - source - funding - citation - charter - cross.name - data.pri - data.sec - hardware - op.sys - dbms - language - software - format - access - updates - con.onl - con.mag - con.flp - con.elm - con.pap - acc.onl - acc.mag - acc.flp - acc.elm - acc.pap - byt.all - byt.pri - ent.pri - comment This database no longer exists. It has been subsumed into JIPIDV /// entry JIPIDN number 10046 history - status defunct res.nam - res.add - res.tel - res.net - gen - gen.add - gen.tel - gen.net - con.nam - con.add - con.tel - con.net - acc.nam - acc.add - acc.tel - acc.net - name.now Natural Variant Database: Asian and Oceania Node of the International Protein Information Database nam.alt - nam.bad - source - funding - citation - charter - cross.name - data.pri - data.sec - hardware - op.sys - dbms - language - software - format - access - updates - con.onl - con.mag - con.flp - con.elm - con.pap - acc.onl - acc.mag - acc.flp - acc.elm - acc.pap - byt.all - byt.pri - ent.pri - comment This database no longer exists. It has been subsumed into JIPIDV. /// entry JIPIDP number 10095 history gk 06/19/90 initial entry status response res.nam Dr. Akira Tsugita res.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN res.tel [011-81] 471-23-9777 res.net ex5292@jpnsut30.bitnet gen.nam Dr. Akira Tsugita gen.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN gen.tel [011-81] 471-23-9777 gen.net ex5292@jpnsut30.bitnet con.nam Dr. Akira Tsugita con.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN con.tel [011-81] 471-23-9777 con.net ex5292@jpnsut30.bitnet acc.nam Dr. Akira Tsugita acc.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN acc.tel [011-81] 471-23-9777 acc.net ex5292@jpnsut30.bitnet name.now Physical Property Database nam.alt - nam.bad - source literature [journals]; literature [books] funding Japanese government; research funds; donations citation - charter JIPIDP contains information on protein transition number, transition states, and conditions. Essentially the database deals with thermal properties and will extend to optical properties as well. cross.name PIR; JIPIDB data.pri nucleotide sequences; amino acid sequences data.sec - hardware VAX 11/750 op.sys VMS dbms in-house language Fortran software - format CODATA - like access no limitations updates 3 per year con.onl yes con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm no acc.pap no byt.all - byt.pri - ent.pri 250 comment PIR, MIPS, and JIPID are online and collect data cooperatively. JIPID also collaborates closely with DDBJ. JIPIDS is formed by two sub-databases: JIPIDSP and JIPIDSN. /// entry JIPIDS number 10047 history fm 06/11/87 initial entry fm 06/11/87 sent questionnaire to A.Tsugita fm 07/15/87 response received from A.Tsugita jl 01/13/88 cleared up charter and data.sec categories gk 06/18/90 updated entry from returned questionnaire status response res.nam Dr. Akira Tsugita res.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN res.tel [011-81] 471-23-9777 res.net ex5292@jpnsut30.bitnet gen.nam Dr. Akira Tsugita gen.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN gen.tel [011-81] 471-23-9777 gen.net ex5292@jpnsut30.bitnet con.nam Dr. Akira Tsugita con.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN con.tel [011-81] 471-23-9777 con.net ex5292@jpnsut30.bitnet acc.nam Dr. Akira Tsugita acc.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN acc.tel [011-81] 471-23-9777 acc.net ex5292@jpnsut30.bitnet name.now Protein Sequence Database: Asian and Oceania Node of the International Protein Information Database nam.alt JIPIDS nam.bad - source literature (books and journals); direct submission funding Japanese government; research funds; donations citation - charter JIPIDS collects data from journals published in Asia and Oceania and are in direct contact with China CODATA macrobiomolecule group as well as with Shanghai, Taiwan, Korea, India and Australia. The following specific fields are covered: plants, plant virus, genomic and protein information for E.Coli, rice, T4 phage, amylases, ferredoxins, kalikreins, calmodulins and thioredoxins. cross.name MIPS; PDB; EMBL; GENBANK data.pri nucleotide sequences; amino acid sequences data.sec [database] cross-references; [biological] literature citations; [nucleotide sequence] functional features; index terms; [amino acid sequence] functional features; [sequence] sources hardware VAX 11/750 op.sys VMS dbms - language - software - format the standardized format from CODATA task group on protein coordination access no limitations updates every 3-4 months con.onl yes con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm no acc.pap no byt.all - byt.pri - ent.pri 2940 comment PIR (Washington), MIPS (Max Planck, Munich) and JIPID are online (BITNET) and collect data cooperatively. JIPID also collaborates closely with DDBJ. JIPIDS is formed by two sub-bases: the Protein sequence database (JIPIDSP) and the Nucleic acid sequence database (JIPIDSN)). /// entry JIPIDSN number 10096 history gk 06/19/90 initial entry status response res.nam Dr. Akira Tsugita res.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN res.tel [011-81] 471-23-9777 res.net ex5292@jpnsut30.bitnet gen.nam Dr. Akira Tsugita gen.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN gen.tel [011-81] 471-23-9777 gen.net ex5292@jpnsut30.bitnet con.nam Dr. Akira Tsugita con.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN con.tel [011-81] 471-23-9777 con.net ex5292@jpnsut30.bitnet acc.nam Dr. Akira Tsugita acc.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN acc.tel [011-81] 471-23-9777 acc.net ex5292@jpnsut30.bitnet name.now Nucleic Acid Sequence Database nam.alt JIPIDSN nam.bad - source literature [books]; literature [journals] funding Japanese government; research funds; donations citation - charter - cross.name JIPIDS data.pri nucleotide sequences; amino acid sequences data.sec gene name; gene location; protein [coding regions]; sources hardware VAX 11/750 op.sys VMS dbms in-house language Fortran software NQS format NBFR-like access no limitations updates 3 per year con.onl yes con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm no acc.pap no byt.all - byt.pri - ent.pri 1750 comment PIR, MIPS, and JIPID are online and collect data cooperatively. JIPID also collaborates closely with DDBJ. JIPIDS is formed by two sub-databases: JIPIDSP and JIPIDSN. /// entry JIPIDV number 10038 history fm 06/11/87 initial entry fm 06/11/87 sent questionnaire to A.Tsugita fm 07/15/87 response received from A.Tsugita jl 01/13/88 cleared up charter and data.sec categories gk 06/19/90 updated entry from returned questionnaire status response res.nam Dr. Akira Tsugita res.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN res.tel [011-81] 471-23-9777 res.net ex5292@jpnsut30.bitnet gen.nam Dr. Akira Tsugita gen.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN gen.tel [011-81] 471-23-9777 gen.net ex5292@jpnsut30.bitnet con.nam Dr. Akira Tsugita con.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN con.tel [011-81] 471-23-9777 con.net ex5292@jpnsut30.bitnet acc.nam Dr. Akira Tsugita acc.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN acc.tel [011-81] 471-23-9777 acc.net ex5292@jpnsut30.bitnet name.now Variant Database: Asian and Oceania Node of the International Protein Information Database nam.alt JIPIDV nam.bad - source literature; direct submissions funding partially by Japanese government citation - charter The database is the extension of JIPIDS, JIPIDP and JIPIDB. The extensions are the categories of Method (naming enzyme used and special notes on the mutagenesis) and Modification of the replacement cross.name JIPIDB; JIPIDS; EMBL; JIPIDP; GENBANK data.pri amino acid sequences [artificial variants]; [variant] biological activity and physical properties; nucleic acid sequences [variants] data.sec [database] cross-references; index terms; [molecular biology] literature citations; [amino acid mutagenizing] methods; [amino acid] chemical modification; [protein] molecular properties; [protein variant] sources hardware VAX 11/750 op.sys VMS dbms in-house language FORTRAN software in-house (for dbms; written in FORTRAN) format an extended format from the standardized CODATA format access no limitations updates every six months con.onl yes con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm no acc.pap no byt.all - byt.pri - ent.pri 3000 comment JIPIDV (formerly JIPIDA) has subsumed both JIPIDM and JIPIDN /// entry LIMB number 10012 history fm 04/07/87 initial entry jl 12/10/87 update jl 02/08/88 update using memo from cb jl 12/06/89 updated for release 1.2 gk 06/21/90 updated entry from returned questionnaire status response res.nam Dr. Christian Burks res.add T-10, MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. res.tel (505) 667-6683 res.net cb%intron@lanl.gov gen.nam LiMB Database gen.add T-10, MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. gen.tel (505) 667-9455 gen.net limb%life@lanl.gov con.nam Gifford Keen con.add T-10, MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. con.tel (505) 667-9455 con.net limb%life@lanl.gov acc.nam Gifford Keen acc.add T-10, MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. acc.tel (505) 667-9455 acc.net limb%life@lanl.gov name.now LiMB nam.alt Listing of Molecular Biology Databases nam.bad - source standard questionnaires completed by the staffs of other databases funding Los Alamos National Laboratory ISRD citation [1] Burks,C., Lawton,J., Bell,G. (1988) The LiMB database. 241, p. 888. [2] Lawton,J., Burks,C., Martinez,F. (1989) Overview of the LiMB database. 17, pp. 5885-5899. charter The goal of LiMB is to provide the scientific community with a comprehensive overview of databases relevant to molecular biology and related data sets. cross.name - data.pri [molecular biology] databases data.sec database access information; database contribution information; database characteristics; [molecular biology] literature citations; [hardware] database maintenance; [software] database maintenance hardware Sun 4/60 op.sys UNIX dbms Sybase relational DBMS language - software - format line type record access no limitations updates yearly con.onl yes con.mag no con.flp yes con.elm yes con.pap yes acc.onl no acc.mag no acc.flp yes acc.elm yes acc.pap yes byt.all 162334 byt.pri 3500 ent.pri 94 comment numbers given are for release 2.0 /// entry LIPIDPHASE number 10079 history jl 12/04/89 initial entry gk 04/23/90 updated entry from returned questionnaire status response res.nam Prof. Martin Caffrey res.add Dep't of Chemistry, 120 W. 18th Ave. Ohio State Univ. Columbus, OH 43210 U.S.A. res.tel (614) 292-8437 res.net TS7074@OHSTVMA gen.nam Prof. Martin Caffrey gen.add Dep't of Chemistry, 120 W. 18th Ave. Ohio State Univ. Columbus, OH 43210 U.S.A. gen.tel (614) 292-8437 gen.net TS7074@OHSTVMA con.nam - con.add - con.tel - con.net - acc.nam - acc.add - acc.tel - acc.net - name.now Lipid Phase Database nam.alt - nam.bad - source literature; personal communication funding NIST citation - charter LIPIDPHASE seeks to compile evaluated lipid phase behavior in a single, continuously revised computer file with a view to providing ready access to the data itself and to the appropriate literature. cross.name - data.pri lipids [miscibility properties]; lipids [mesomorphic phase transition behavior] data.sec methods; lipid [aqueous phase composition]; bibliographic information; lipids [enthalpy change]; lipids [transition temperature]; lipids [transition type] hardware Mac op.sys - dbms Excel language - software - format - access - updates continuously con.onl no con.mag no con.flp yes con.elm yes con.pap yes acc.onl no acc.mag no acc.flp yes acc.elm yes acc.pap yes byt.all - byt.pri - ent.pri - comment - /// entry LYSIS number 10061 history jl 03/08/88 initial entry from article by B.Keil jl 05/26/88 additional information added from letter from B.Keil gk 02/20/90 updated from returned questionnaire status response res.nam Dr. Borivoj Keil res.add Institut Pasteur 28 rue du Docteur Roux Paris, Cedex 15 75724 FRANCE res.tel 1-6907-9535 res.net keil@pasteur.bitnet -or- dbi0061.dialcom (Telecom Gold) gen.nam Dr. Borivoj Keil gen.add Institut Pasteur 28 rue du Docteur Roux Paris, Cedex 15 75724 FRANCE gen.tel 1-6907-9535 gen.net keil@pasteur.bitnet -or- dbi0061.dialcom (Telecom Gold) con.nam Dr. Borivoj Keil con.add Institut Pasteur 28 rue du Docteur Roux Paris, Cedex 15 75724 FRANCE con.tel 1-6907-9535 con.net keil@pasteur.bitnet -or- dbi0061.dialcom (Telecom Gold) acc.nam Dr. Borivoj Keil acc.add Institut Pasteur 28 rue du Docteur Roux Paris, Cedex 15 75724 FRANCE acc.tel 1-6907-9535 acc.net keil@pasteur.bitnet -or- dbi0061.dialcom (Telecom Gold) name.now Proteolysis Database nam.alt LYSIS nam.bad - source literature funding partially by the French government citation Keil,B. (1987) Proteolysis Data Bank: specificity of alpha-chymotrypsin from computation of protein cleavages. 1, pp. 13-20. charter LYSIS is a collection of data and bibliographic citations on the observed cleavage sites in known sequences of peptide and protein substrates by endopeptidases (EC 3.4.21-99). cross.name PIR data.pri [protein substrate cleavage site] literature citations; proteinase specificity data.sec peptides [synthetic substrates]; proteinase inhibitors; proteinase sources; enzyme [substrate modifications] hardware IBM PC/AT op.sys MS-DOS 3.2 dbms dBASE IV, DIGEST language C software - format - access no limitations updates every six months (planned) con.onl no con.mag no con.flp yes con.elm yes con.pap yes acc.onl no acc.mag no acc.flp yes acc.elm no acc.pap no byt.all 4000000 byt.pri - ent.pri 3000 comment - /// entry MBCRR number 10056 history jl 11/30/88 received pre-release announcement jl 11/01/89 initial entry gk 05/31/90 updated entry from returned questionnaire status response res.nam Dr. Randall Smith res.add LG-1 MBCRR/Dana-Farber Cancer Institute 44 Binney St. Boston, MA 02115 U.S.A. res.tel (617) 732-3746 res.net rsmith%mbcrr@harvard.edu or rsmith%mbcrr@husc6.bitnet gen.nam Dr. Randall Smith gen.add LG-1 MBCRR/Dana-Farber Cancer Institute 44 Binney St. Boston, MA 02115 U.S.A. gen.tel (617) 732-3746 gen.net rsmith%mbcrr@harvard.edu or rsmith%mbcrr@husc6.bitnet con.nam - con.add - con.tel - con.net - acc.nam Dr. Randall Smith acc.add LG-1 MBCRR/Dana-Farber Cancer Institute 44 Binney St. Boston, MA 02115 U.S.A. acc.tel (617) 732-3746 acc.net rsmith%mbcrr@harvard.edu or rsmith%mbcrr@husc6.bitnet name.now MBCRR Protein Family Diagnostic Pattern Database and Search Tool nam.alt - nam.bad - source SWISS-PROT funding NIH grant LM05205; NSF grant DIR-8715633 citation Smith,R., Smith,T. (1990) Automatic Generation of Primary Sequence Patterns from Sets of Related Protein Sequences. 87, pp. 118-122. charter MBCRR is a database of consensus-like protein sequence patterns derived from a set of homologous sequences in SWISS-PROT. Families of related protein sequences are identified by running the entire SWISS-PROT database against itself. cross.name SWISPROT data.pri [diagnostic sequence patterns] amino acid sequences; amino acid class covering (AACC) pattern data.sec [pattern information content] amino acid sequences; cluster trees; enzymes [EC numbers]; amino acid [loci] hardware Sun 4; DEC 3100 op.sys Unix; DEC ULTRIX dbms - language - software plsearch (for protein sequence searching; written in C) format ASCII relational tables with 'tabs' as field delimiters access no limitations updates 2/year con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl yes acc.mag yes acc.flp no acc.elm yes acc.pap no byt.all 2532406 byt.pri 1416014 ent.pri 4538 comment - /// entry MEDLINE number 10013 history cb 02/04/87 response received from D.Masys fm 04/07/87 initial entry jl 10/12/87 address & phone confirmed by e-mail gk 07/03/90 updated entry from returned questionnaire status response res.nam MEDLARS Management Section res.add 8600 Rockville Pike National Library of Medicine Bethesda, MD 20894 U.S.A. res.tel (800) 638-8480 res.net - gen.nam MEDLARS Management Section gen.add 8600 Rockville Pike National Library of Medicine Bethesda, MD 20894 U.S.A. gen.tel (800) 638-8480 gen.net - con.nam MEDLARS Management Section con.add 8600 Rockville Pike National Library of Medicine Bethesda, MD 20894 U.S.A. con.tel (800) 638-8480 con.net - acc.nam MEDLARS Management Section acc.add 8600 Rockville Pike National Library of Medicine Bethesda, MD 20894 U.S.A. acc.tel (800) 638-8480 acc.net - name.now MEDLINE and Backfiles nam.alt Medical Literature Access and Retrieval System; MEDLARS nam.bad Elhill source literature (biomedical & molecular biology journals) funding federal government appropriations and user access fees citation Haynes,R., McKibbon,K., Fitzgerald,D., Guyatt,G., Walker,C., Sackett,D. (1986) How to keep up with the medical literature: access by personal computer. 105, pp. 810-816. charter MEDLINE seeks comprehensive coverage of the world's biomedical literature. cross.name - data.pri [medical] index terms; [biological] index terms; [biological] literature citations; [medical] literature citations data.sec [medical] literature abstracts; [biological] literature abstracts; index terms [medical]; literature abstracts hardware IBM op.sys MVS-XA dbms ELHILL retrieval system language PL/I software GRATEFULL MED format - access no limitations updates monthly con.onl no con.mag no con.flp no con.elm no con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm no acc.pap yes byt.all 60000000000 byt.pri 6000000 ent.pri - comment Citations are indexed using Medical Subject Headings (MeSH), The National Library of Medicine's controlled vocabulary. Licensees may optain the entire MEDLINE database or subsets of the MEDLINE database on magnetic tape. Journal publishers who want their journals to be included in the MEDLINE database contact: Medical Subject Hedings Section (301) 496-1459 /// entry MICIS number 10027 history fm 05/13/87 initial entry fm 05/22/87 sent questionnaire to G.Alliston status no-response res.nam - res.add - res.tel - res.net - gen.nam Dr. Geraldine Alliston gen.add Laboratory of the Government Chemist Cornwall House - Waterloo Road London SE1 8XY U.K. gen.tel [011-44] 1-211-8834 gen.net - con.nam - con.add - con.tel - con.net - acc.nam - acc.add - acc.tel - acc.net - name.now Microbial Culture Information Service nam.alt MiCIS nam.bad - source National Collection of Type Cultures; National Collections of Industrial and Marine Bacteria; National Collection of Yeast Cultures; CAB International Mycological Institute funding DTI (Development of Trade and Industry); subscriber fees citation - charter MiCIS is part of the DTI's campaign to foster the industrial development of biotechnology through support of industrially oriented work in culture collections of microorganisms and information services for industry. Eventually it will contain data from all the U.K. National Culture Collections (over 30,000 strains). The physical properties of microorganisms listed in MiCIS include growth and preservation, sensitivity and tolerance, substrate utilization, enzymes and metabolites produced and morphology. cross.name - data.pri [cultured] microorganisms data.sec literature citations; [microorganism] sources; taxonomic classification; microorganisms [history] hardware GEC 4190 minicomputer op.sys in-house dbms in-house language - software - format standard format; line type text access no limitations updates - con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl yes acc.mag no acc.flp no acc.elm no acc.pap yes byt.all - byt.pri - ent.pri - comment There is a subscriber fee of 200 pounds per year plus a usage fee. This entry is based on a sample printout of a MiCIS entry and on a news release heralding the creation of MiCIS. /// entry MICROGERM number 10073 history jl 11/29/89 initial entry gk 03/06/90 updated entry from returned questionnaire status response res.nam Dr. F. Joe Hanus res.add Dep't of Botany and Plant Pathology Oregon State Univ. Corvallis, OR 97331 U.S.A. res.tel (503) 754-3451 res.net hanusj@bionette.ucs.orst.edu gen.nam Dr. Larry Moore gen.add Dep't of Botany and Plant Pathology Oregon State Univ. Corvallis, OR 97331 U.S.A. gen.tel - gen.net hanusj@bionette.ucs.orst.edu con.nam Dr. F. Joe Hanus con.add Dep't of Botany and Plant Pathology Oregon State Univ. Corvallis, OR 97331 U.S.A. con.tel (503) 754-3451 con.net hanusj@bionette.ucs.orst.edu acc.nam Dr. Larry Moore acc.add Dep't of Botany and Plant Pathology Oregon State Univ. Corvallis, OR 97331 U.S.A. acc.tel - acc.net hanusj@bionette.ucs.orst.edu name.now Microbial Germplasm Database and Network nam.alt MGD nam.bad - source questionnaires completed by curators of collections funding USDA/CSRS citation - charter The Microbial Germplasm Database and Network is being implemented to facilitate communication between scientists who are involved in plant-related studies and who maintain research-oriented 'working collections' of microorganisms, nematodes and/or subcellular entities. The database and network will provide on-line information regarding collections and accessions and will serve to apprise the scientific community of the importance of the germplasm in these many collections. cross.name - data.pri laboratories [focus]; cultures [curator]; germplasms data.sec cultures [distribution]; laboratories [computer capabilities] hardware MS-DOS based 286 based AT op.sys MS-DOS dbms Foxbase2.1 language - software - format line type format access to contributors of information and some state and federal officials updates quarterly con.onl no con.mag no con.flp yes con.elm yes con.pap yes acc.onl no acc.mag no acc.flp no acc.elm yes acc.pap yes byt.all 500000 byt.pri 300000 ent.pri 400 comment - /// entry MINE number 10077 history jl 11/29/89 initial entry gk 02/28/90 updated entry from returned questionnaire status response res.nam K. Wads res.add CAB International Mycological Institute Ferry Lane Kew, Surrey TW9 3AF U.K. res.tel 44 1940 4086 res.net - gen.nam K. Wads gen.add CAB International Mycological Institute Ferry Lane Kew, Surrey TW9 3AF U.K. gen.tel 44 1940 4086 gen.net - con.nam - con.add - con.tel - con.net - acc.nam - acc.add - acc.tel - acc.net - name.now Microbial Information Network Europe nam.alt MINE nam.bad - source individual European microbial strain collections funding CEC Bridge Programme citation Gams,W. (1988) Structuring strain data for storage and retrieval of information on fungi and yeast in MINE. 134(6), pp. 1667-1690. charter MINE is an Integrated Catalogue Project, incorporating a European Network of Microbial Culture Collection Databanks. Its objective is to establish a computer network of microbial information across Europe. cross.name MSDN data.pri microbial strain collection information data.sec - hardware VAX 8350/6310 Cluster op.sys - dbms Vax VMS language - software - format - access - updates - con.onl - con.mag - con.flp - con.elm - con.pap - acc.onl - acc.mag - acc.flp - acc.elm - acc.pap - byt.all - byt.pri - ent.pri - comment - /// entry MIPS number 10037 history fm 06/10/87 initial entry fm 06/11/87 sent questionnaire to H.Mewes status no-response res.nam - res.add - res.tel - res.net - gen.nam Dr. Hans-Werner Mewes gen.add MPI/GEN Max Planck Inst. fur Biochemie Martinsreid 8033 WEST GERMANY gen.tel - gen.net mewes@dm0mpb51.bitnet con.nam - con.add - con.tel - con.net - acc.nam - acc.add - acc.tel - acc.net - name.now Martinsreid Institute for Protein Sequence Data nam.alt MIPS nam.bad - source - funding European Economic Community citation - charter MIPS serves as the European partner of PIR, improving accessibility for European researchers and attempting speedier processing of protein sequences submitted for publication. cross.name - data.pri amino acid sequences data.sec [amino acid sequence] functional features; index terms; [amino acid sequence] literature citations hardware - op.sys - dbms - language - software - format - access - updates - con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl no acc.mag no acc.flp no acc.elm no acc.pap no byt.all - byt.pri - ent.pri - comment - /// entry MOUSE number 10075 history jl 11/30/89 initial entry status no-response res.nam - res.add - res.tel - res.net - gen.nam Dr. Joseph Nadeau gen.add The Jackson Laboratory Bar Harbor, ME 04609 U.S.A. gen.tel - gen.net - con.nam Dr. Joseph Nadeau con.add The Jackson Laboratory Bar Harbor, ME 04609 U.S.A. con.tel - con.net - acc.nam Dr. Joseph Nadeau acc.add The Jackson Laboratory Bar Harbor, ME 04609 U.S.A. acc.tel - acc.net - name.now List of Mouse DNA Clones and Probes nam.alt - nam.bad - source literature funding - citation - charter List of Mouse DNA Clones and Probes is a booklet containing (1) a list of mouse probes and clones and (2) a map showing the location of the genes in the mouse for which probes and clones are listed. cross.name - data.pri [mouse] probes; [mouse] clones data.sec [mouse clone and probe] genetic maps hardware - op.sys - dbms - language - software - format - access no limitations updates every six months con.onl - con.mag - con.flp - con.elm - con.pap yes acc.onl no acc.mag no acc.flp no acc.elm no acc.pap yes byt.all - byt.pri - ent.pri - comment - /// entry MOUSEMAN number 10076 history jl 11/30/89 initial entry status no-response res.nam - res.add - res.tel - res.net - gen.nam Dr. Joseph Nadeau gen.add The Jackson Laboratory Bar Harbor, ME 04609 U.S.A. gen.tel - gen.net - con.nam Dr. Joseph Nadeau con.add The Jackson Laboratory Bar Harbor, ME 04609 U.S.A. con.tel - con.net - acc.nam Dr. Joseph Nadeau acc.add The Jackson Laboratory Bar Harbor, ME 04609 U.S.A. acc.tel - acc.net - name.now Linkage and synteny homologies between mouse and man nam.alt - nam.bad - source literature funding - citation - charter Linkage and synteny homologies between mouse and man is a booklet containing (1) a man on mouse homology map and (2) a list of homologous loci. cross.name - data.pri genetic maps [man on mouse homology maps]; genetic map [man on mouse homologous loci] data.sec - hardware - op.sys - dbms - language - software - format - access no limitations updates every six months con.onl - con.mag - con.flp - con.elm - con.pap yes acc.onl no acc.mag no acc.flp no acc.elm no acc.pap yes byt.all - byt.pri - ent.pri - comment - /// entry MSDN number 10032 history fm 05/18/87 initial entry fm 05/22/87 sent questionnaire to E.Ross fm 06/15/87 response received from E.Ross gk 05/01/90 updated entry from returned questionnaire status response res.nam B. Kirsop res.add MSDN Cambridge University Institute of Biotechnology 307 Huntingdon Road Cambridge University, Cambridge CB3 0JX U.K. res.tel 0223-276622 res.net - gen.nam MSDN Secretariat gen.add Cambridge University Institute of Biotechnology 307 Huntingdon Road Cambridge University, Cambridge CB3 0JX U.K. gen.tel [011-44] 223-277-502 gen.net 42:cdt0001 (CODATA/Dialcom) con.nam MSDN Secretariat con.add Cambridge University Institute of Biotechnology 307 Huntingdon Road Cambridge University, Cambridge CB3 0JX U.K. con.tel [011-44] 223-277-502 con.net 42:cdt0001 (CODATA/Dialcom) acc.nam MSDN Secretariat acc.add Cambridge University Institute of Biotechnology 307 Huntingdon Road Cambridge University, Cambridge CB3 0JX U.K. acc.tel [011-44] 223-277-502 acc.net 42:cdt0001 (CODATA/Dialcom) name.now Microbial Strain Data Network nam.alt MSDN nam.bad - source Centers of information on microbial strains and/or cultured cell lines funding PAHO; et al; CEC; NSF; NIH; EPA; UNEP; UNESCO; royalties on usage citation [1] Hill,L., Krichevsky,M. (1986) International strain data networks. 2, pp. 341-347. [2] Hill,L., Krichevsky,M. (1985) Needs and specifications for an international microbial strain data network. . charter MSDN is an international network set up to establish pathways of communication concerning collections of data on microbial strains and cultured cell lines held in culture collections and other laboratories or databases to provide a mechanism for locating properties. MSDN does not list the strains at individual laboratories, but indicates (using index terms) the categories of data available from each center and the means used to record and access these data. MSDN is not merely a database. It is a communications mechanism providing support services, such as suggesting standards for the communication of data and holding training courses on the use of computers in microbiology. It is also a linking mechanism, linking related databases in order to facilatate data retrieval. The information provided under 'data' refers to the MSDN Central Directory database only. cross.name WDC; MICIS; DATASTAR; ICECC; DSM; CBS; NCYC data.pri [microbial strain database] cross-references; [microbial strain] index terms data.sec database access information; database characteristics; database contribution information hardware TYMNET op.sys MS-DOS dbms EPUB language - software MICRO-IS programs (for manipulation of microbiological data) format flat text files access no limitations updates monthly con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl yes acc.mag yes acc.flp yes acc.elm yes acc.pap yes byt.all - byt.pri - ent.pri - comment MSDN is accessible via system 42 CODATA NETWORK/Dialcom. MSDN's sources of information can be either collections of the microorganisms themselves or of data describing microorganisms. They may be individuals, networks, institutions, culture collections, other databases, etc. /// entry NAPRALERT number 10059 history jl 04/22/88 complete entry sent to LiMB by C. Beecher jl 05/23/88 initial entry gk 02/20/90 updated from returned questionnaire status response res.nam Dr. Chris Beecher res.add PCRPS/833 S. Wood St. Univ. of Illinois at Chicago - Medical Center Chicago, IL 60612 U.S.A. res.tel (312) 996-9035 res.net beecher@uicbal.bitnet gen.nam Dr. Chris Beecher gen.add PCRPS/833 S. Wood St. Univ. of Illinois at Chicago - Medical Center Chicago, IL 60612 U.S.A. gen.tel (312) 996-9035 gen.net beecher@uicbal.bitnet con.nam Dr. Norman Farnsworth con.add PCRPS/833 S. Wood St. Univ. of Illinois at Chicago - Medical Center Chicago, IL 60612 U.S.A. con.tel (312) 996-7253 con.net beecher@uicbal.bitnet acc.nam Dr. Norman Farnsworth acc.add PCRPS/833 S. Wood St. Univ. of Illinois at Chicago - Medical Center Chicago, IL 60612 U.S.A. acc.tel (312) 996-7253 acc.net beecher@uicbal.bitnet name.now NAPRALERT nam.alt NAtural PRoduct ALERT nam.bad - source literature (over 700 international journals) funding N.I.H.; World Health Org.; NSF citation Farnsworth,N., Loub,W., Soejarto,D., Quinn,M. (1985) NAPRALERT: computer-handling of natural product research data. 25, pp. 99-103. charter NAPRALERT seeks to computerize all references to the isolation of chemical compounds from living organisms and/or the pharmacology of natural products pure or crude. All chemicals isolated from living organisms are cross referenced with their pharmacological and biological sources. Chemotaxonomy is supported as extreme care is placed on taxonomic and chemical nomenclature. The chemical compound citations have an emphasis on secondary metabolites and the taxonomy citations are primarily for plants and bacteria. cross.name MEDFLOR; TROPICOS data.pri [chemical compound] literature citations data.sec [pharmacology] literature citations; [taxonomy] literature citations hardware SUN 4 /330 op.sys UNIX dbms INGRES language SQL, QUEL software - format too large for flat files: variable length fields access applications for access accepted updates quarterly con.onl yes con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag no acc.flp no acc.elm yes acc.pap no byt.all 500000000 byt.pri 350000 ent.pri 241000 comment The ent.pri figure is composed of 426,000 pharmacological entries, 87,000 compounds and 38,000 organisms. NAPRALERT is accessible via Bitnet. /// entry NEWAT number - history - status defunct res.nam - res.add - res.tel - res.net - gen - gen.add - gen.tel - gen.net - con.nam - con.add - con.tel - con.net - acc.nam - acc.add - acc.tel - acc.net - name.now NEWAT nam.alt - nam.bad - source - funding - citation - charter - cross.name - data.pri - data.sec - hardware - op.sys - dbms - language - software - format - access - updates - con.onl - con.mag - con.flp - con.elm - con.pap - acc.onl - acc.mag - acc.flp - acc.elm - acc.pap - byt.all - byt.pri - ent.pri - comment NEWAT no longer exists. /// entry OLIGONUC number 10071 history jl 11/28/89 initial entry gk 05/26/90 updated entry from returned questionnaire status response res.nam Dr. Flavio Ramalho-Ortigao res.add Sektion Polymere Universitat Ulm Ulm D-7900 WEST GERMANY res.tel - res.net ORTIGAO@DULRUU51.bitnet gen.nam Dr. Flavio Ramalho-Ortigao gen.add Sektion Polymere Universitat Ulm Ulm D-7900 WEST GERMANY gen.tel - gen.net ORTIGAO@DULRUU51.bitnet con.nam Dr. Flavio Ramalho-Ortigao con.add Sektion Polymere Universitat Ulm Ulm D-7900 WEST GERMANY con.tel - con.net ORTIGAO@DULRUU51.bitnet acc.nam Dr. Flavio Ramalho-Ortigao acc.add Sektion Polymere Universitat Ulm Ulm D-7900 WEST GERMANY acc.tel - acc.net ORTIGAO@DULRUU51.bitnet name.now Chemically Synthesized Oligonucleotide Database nam.alt - nam.bad - source literature funding - citation Groeger,G., Ramalho-Ortigao,F., Steil,H., Seliger,H. (1988) A comprehensive list of chemically synthesized genes. 16, pp. 7763-7771. charter Due to their importance in all areas of biomedical sciences, a database of chemically synthesized oligonucleotides has become necessary. cross.name - data.pri [chemically synthesized oligonucleatide] nucleotide sequences data.sec literature citations; oligonuclotide sequences [features]; index terms hardware VAX 8600 op.sys VMS dbms - language - software - format line type format without hierarchical structure (CODATA standard) access no limitations updates 2/year con.onl yes con.mag no con.flp no con.elm yes con.pap no acc.onl yes acc.mag no acc.flp no acc.elm yes acc.pap no byt.all - byt.pri - ent.pri - comment Due to the lack of external funding the database is still in the formative stages. /// entry OMIM number 10064 history jl 01/11/88 initial entry gk 12/05/89 update with questionnaire from Maidak status response res.nam Dr. Bonnie Maidak res.add 1830 E. Monument St., Third Floor Welch Medical Library Baltimore, MD 21205 U.S.A. res.tel (301) 955-9656 res.net bonnie@welch.jhu.edu gen.nam Dr. Bonnie Maidak gen.add 1830 E. Monument St., Third Floor Welch Medical Library Baltimore, MD 21205 U.S.A. gen.tel (301) 955-9656 gen.net bonnie@welch.jhu.edu con.nam Dr. Victor McKusick con.add Blalock 10 Johns Hopkins Hospital Baltimore, MD 21205 U.S.A. con.tel (301) 955-6641 con.net - acc.nam Dr. Bonnie Maidak acc.add 1830 E. Monument St., Third Floor Welch Medical Library Baltimore, MD 21205 U.S.A. acc.tel (301) 955-9656 acc.net bonnie@welch.jhu.edu name.now OMIM nam.alt Mendelian Inheritance in Man; McKusick database nam.bad MIM source literature; personal communication; database author's conclusions funding Howard Hughes Medical Institute; NLM citation - charter - cross.name HGML data.pri [human inherited] diseases; literature citations; [human] genetic maps; genetic maps [human] data.sec - hardware Sun 4/280s op.sys Sun OS 4.0.3 dbms Information Retrieval Experiment (IRx) language C software IBM-PC Kermit (for improving access) format - access no limitations updates daily con.onl yes con.mag no con.flp no con.elm yes con.pap yes acc.onl yes acc.mag no acc.flp no acc.elm no acc.pap yes byt.all 16800000 byt.pri 14400000 ent.pri 5000 comment - /// entry PDB number 10015 history cb 12/01/86 response received from T.Koetzle fm 04/07/87 initial entry jl 10/09/87 address & phone confirmed via e-mail jl 05/13/88 added comment about on-line access to PDB gk 03/21/90 updated entry from returned questionnaire status response res.nam Dr. Thomas Koetzle res.add Chemistry Department Brookhaven National Laboratory Upton, NY 11973 U.S.A. res.tel (516) 282-4384 res.net koetzle@bnlchm.bitnet gen.nam Mrs Frances Bernstein gen.add Chemistry Department Brookhaven National Laboratory Upton, NY 11973 U.S.A. gen.tel (516) 282-4382 gen.net pdb@bnlchm.bitnet con.nam Mrs Frances Bernstein con.add Chemistry Department Brookhaven National Laboratory Upton, NY 11973 U.S.A. con.tel (516) 282-4382 con.net pdb@bnlchm.bitnet acc.nam Mrs Frances Bernstein acc.add Chemistry Department Brookhaven National Laboratory Upton, NY 11973 U.S.A. acc.tel (516) 282-4382 acc.net pdb@bnlchm.bitnet name.now Protein Data Bank nam.alt PDB nam.bad - source direct submission from principal investigators; literature funding NSF; N.I.H.; user fees; DOE citation [1] Bernstein,F., Koetzle,T., Williams,G., Meyers,E., Brice,M., Rodgers,J., Kennard,O., Shimanouchi,T., Tasumi,M. (1977) The Protein Data Bank: A computer-based archival file for macromolecular structures. 112, pp. 535-542. [2] Abola,E., Bernstein,F., Koetzle,T. (1985) The Protein Data Bank. Elsevier Science Publishers B.V., North Holland, pp. 139-144. charter PDB seeks comprehensive coverage of bibliographic, atomic coordinate and crystallographic structure factor data for biological macromolecules. cross.name PIR data.pri [biomacromolecule] atomic coordinates data.sec [biomacromolecule] functional features; [biomacromolecule] literature citations; [biomacromolecule] molecular properties hardware Micro VAX II; Cyber 830 op.sys VMS; NOS/BE dbms CDC Update language - software source code for a number of programs to operate database (for data manipulation; written in FORTRAN) format sequential text access no limitations updates quarterly con.onl yes con.mag yes con.flp yes con.elm yes con.pap no acc.onl yes acc.mag yes acc.flp yes acc.elm yes acc.pap yes byt.all 102000000 byt.pri 90000000 ent.pri 503 comment PDB is available on-line through a number of affiliated distribution centers. The Protein Data Bank Newsletter, which is issued quarterly, contains a complete list of these distribution centers. /// entry PIR number 10016 history cb 12/15/86 response received from K.Sidman fm 04/07/87 initial entry jl 12/10/87 address & phone confirmed via e-mail gk 03/30/90 updated entry from returned questionnaire status response res.nam Dr. Kathryn Sidman res.add National Biomedical Research Foundation 3900 Reservoir Rd., N.W. Washington, DC 20007 U.S.A. res.tel (202) 687-2121 res.net pirmail@gunbrf.bitnet gen.nam Dr. Kathryn Sidman gen.add National Biomedical Research Foundation 3900 Reservoir Rd., N.W. Washington, DC 20007 U.S.A. gen.tel (202) 687-2121 gen.net pirmail@gunbrf.bitnet con.nam Dr. James Bair con.add National Biomedical Research Foundation 3900 Reservoir Rd., N.W. Washington, DC 20007 U.S.A. con.tel (202) 687-2121 con.net pirmail@gunbrf.bitnet acc.nam Dr. Kathryn Sidman acc.add National Biomedical Research Foundation 3900 Reservoir Rd., N.W. Washington, DC 20007 U.S.A. acc.tel (202) 687-2121 acc.net pirmail@gunbrf.bitnet name.now National Biomedical Research Foundation Protein Identification Resource and Protein Sequence Database nam.alt PIR Database; Dayhoff Database; NBRF Database nam.bad - source literature (scientific journals and manuscripts); direct submission funding N.I.H. Grant CA40474; NLM Grant LM05206 citation [1] Orcutt,B., George,D., Dayhoff,M. (1983) Protein and nucleic acid sequence database systems. 12, pp. 419-441. [2] George,D., Barker,W., Hunt,L. (1986) The protein identification resource (PIR). 14, pp. 11-15. charter PIR collects data on completed sequence proteins, amino-terminal sequences and bibliographic citations for amino acid sequences. PIR also contains an auxiliary database for sequences in preparation and additional fragmentary and predicted sequences. cross.name HGML data.pri amino acid sequences data.sec [amino acid sequence] functional features; index terms; [amino acid sequence] literature citations hardware VAX 11/780 op.sys VMS dbms PIR(R) Software language VAX-11 FORTRAN software - format flat text file: line type format access no limitations updates quarterly con.onl yes con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm no acc.pap yes byt.all 14500000 byt.pri 5120000 ent.pri 15500 comment - /// entry PKCDD number 10084 history gk 03/28/90 initial entry from returned questionnaire status response res.nam Anne Quinn res.add - res.tel (619) 453-5218 res.net QUINN@SALK-SC2.SDSC.EDU gen.nam Anne Quinn gen.add - gen.tel (619) 453-5218 gen.net QUINN@SALK-SC2.SDSC.EDU con.nam Anne Quinn con.add - con.tel (619) 453-5218 con.net QUINN@SALK-SC2.SDSC.EDU acc.nam Anne Quinn acc.add - acc.tel (619) 453-5218 acc.net QUINN@SALK-SC2.SDSC.EDU name.now Protein Kinase Catalytic Domain Database nam.alt PKINASES.IG nam.bad Steves baby source Published sequence data funding NIH Grant GM38793 citation [1] Hanks,S., Quinn,A., Hunter,T. (1988) The Protein Kinase Family: Conserved Features and Deduced Phylogeny of the Catalytic Domains. 241, pp. 42-52. [2] Hanks,S., Quinn,A. (1990) Methods in Enzymology. (in press). charter PKCDD is useful for the classification and alignment of new protein kinase cross.name - data.pri amino acid sequences [protein kinases] data.sec literature citations [sequences] hardware VAX 6220 op.sys VMS 5.1 dbms Intelligenetics; UWGCG; VMS; Mass11 language - software - format linetype formatt access no limitations updates Monthly or as new sequences are submitted con.onl no con.mag no con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag no acc.flp no acc.elm yes acc.pap no byt.all 58000000 byt.pri 58000000 ent.pri 122 comment - /// entry PMD number 10100 history gk 07/17/90 initial entry status response res.nam Dr Toru Yao res.add Protein Engineering Research Institute 6-2-3, Furuedai Suita, Osaka 565 Japan res.tel 81-6-872-8215 res.net - gen.nam Ken Nishikawa gen.add Protein Engineering Research Institute 6-2-3, Furuedai Suita, Osaka 565 Japan gen.tel - gen.net - con.nam Ken Nishikawa con.add Protein Engineering Research Institute 6-2-3, Furuedai Suita, Osaka 565 Japan con.tel - con.net - acc.nam Ken Nishikawa acc.add Protein Engineering Research Institute 6-2-3, Furuedai Suita, Osaka 565 Japan acc.tel - acc.net - name.now Protein Mutant Database nam.alt PMD nam.bad - source PRFLITDB funding Japanese government (partially) citation - charter The goal of PMD is to collect protein mutants artificially derived from wild-type proteins. Natural mutants are also collected with the exception of those with large numbers of variants. cross.name - data.pri mutants [protein] data.sec mutants [wild-type activity or structure difference]; mutants [expression system]; amino acid [wild-type] hardware VAX 8810 op.systm VMS dbms - language - software - format flat-file format access no limitation updates - con.onl no con.mag yes con.flp no con.elm no con.pap no acc.onl no acc.mag yes acc.flp no acc.elm no acc.pap no byt.all 2000000 byt.pri - ent.pri 7500 comment Each entry corresponding to one article may contain several mutant data for each of which structural or functional features in comparison with the wild-type are recorded /// entry PPR number 10017 history cb 01/02/87 response received from E.Lederberg fm 04/07/87 initial entry gk 04/23/90 updated entry from returned questionnaire status response res.nam Dr. Esther Lederberg res.add Sherman Fairchild Building - 5402 Stanford University School of Medicine Stanford, CA 94305 U.S.A. res.tel (415) 723-1772 res.net - gen.nam Dr. Esther Lederberg gen.add Sherman Fairchild Building - 5402 Stanford University School of Medicine Stanford, CA 94305 U.S.A. gen.tel (415) 723-1772 gen.net - con.nam Dr. Esther Lederberg con.add Sherman Fairchild Building - 5402 Stanford University School of Medicine Stanford, CA 94305 U.S.A. con.tel (415) 723-1772 con.net - acc.nam Dr. Esther Lederberg acc.add Sherman Fairchild Building - 5402 Stanford University School of Medicine Stanford, CA 94305 U.S.A. acc.tel (415) 723-1772 acc.net - name.now Plasmid Prefix Registry nam.alt PPR nam.bad Plasmid Reference Center; PRC source direct submission by registrants funding MBCRR; N.I.H./NSF grant citation [1] Lederberg,E. (1978) Announcement: preliminary and partial list of plasmid prefixes. 1, pp. 270-271. [2] Lederberg,E. (1986) Plasmid prefix designations registered by the Plasmid Reference Center. 15, pp. 57-92. charter The Plasmid Prefix Registry is a database of plasmid prefixes in which registrants reserve a plasmid prefix in the Registry and have sole use of it when naming plasmids. cross.name - data.pri plasmid prefixes data.sec plasmid prefixes [locale of registrants]; plasmid prefixes [name of registrants] hardware IBM PC op.sys - dbms Word Star (word processor) language - software - format - access no limitations updates monthly con.onl no con.mag no con.flp no con.elm no con.pap yes acc.onl no acc.mag no acc.flp no acc.elm no acc.pap yes byt.all - byt.pri - ent.pri - comment - /// entry PRCTR number 10090 history gk 05/09/90 initial entry status response res.nam Dr. Esther Lederberg res.add Sherman Fairchild Building - 5402 Stanford University School of Medicine Stanford, CA 94305 U.S.A. res.tel (415) 723-1772 res.net - gen.nam Dr. Esther Lederberg gen.add Sherman Fairchild Building - 5402 Stanford University School of Medicine Stanford, CA 94305 U.S.A. gen.tel (415) 723-1772 gen.net - con.nam Dr. Esther Lederberg con.add Sherman Fairchild Building - 5402 Stanford University School of Medicine Stanford, CA 94305 U.S.A. con.tel (415) 723-1772 con.net - acc.nam Dr. Esther Lederberg acc.add Sherman Fairchild Building - 5402 Stanford University School of Medicine Stanford, CA 94305 U.S.A. acc.tel (415) 723-1772 acc.net - name.now Plasmid Reference Center Transposon Registry nam.alt PRC Tn Allocations nam.bad - source direct submission by registrants funding NIH/NSF grant to MBCRR citation [1] Campbell,A., Berg,D., Lederberg,E., Starlinger,P., Botstein,D., Novick,R., Szybalski,W. (1981) Plasmid Reference Center Registry of Transposon Allocations through July 1981. 5, pp. 197-206. [2] Lederberg,E. (1986) Plasmid Reference Center Registry of Transposon and Insertion sequence (IS) Allocations through July 1986. 51, pp. 115-118. charter The Plasmid Reference Center Transposon registry allocates numbered blocs to distinguish independent isolates cross.name - data.pri transposons data.sec laboratory [location] hardware IBM PC op.sys MS DOS dbms Word Star language - software - format line type record access no limitations updates sporadically con.onl no con.mag no con.flp no con.elm no con.pap yes acc.onl no acc.mag no acc.flp no acc.elm no acc.pap yes byt.all - byt.pri - ent.pri - comment - /// entry PRFLITDB number 10065 history jl 02/09/88 initial entry gk 05/01/90 updated entry from returned questionnaire status response res.nam Dr. Yasuhiko Seto res.add Protein Research Foundation 4-1-2 Ina Minoh-shi, Osaka 562 JAPAN res.tel 072-29-2040 res.net - gen.nam Dr. Yasuhiko Seto gen.add Protein Research Foundation 4-1-2 Ina Minoh-shi, Osaka 562 JAPAN gen.tel 072-29-2040 gen.net - con.nam - con.add - con.tel - con.net - acc.nam - acc.add - acc.tel - acc.net - name.now PRF/LITDB nam.alt Protein Research Foundation Literature Database; PRFLITDB nam.bad - source [molecular biology] literature funding - citation Seto,Y., Nozaki,Y., Sakakibara,S. (1988) Computational Molecular Biology. 3, pp. 27-36. charter - cross.name - data.pri [amino acid sequence] literature abstracts; [amino acid sequence] literature citations data.sec index terms hardware Data General MV6000; Eclipse MV6000 op.sys AOS/VS/APL dbms APL language A software - format - access - updates - con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl no acc.mag no acc.flp no acc.elm no acc.pap no byt.all 25000000 byt.pri 5944750 ent.pri 20206 comment This information is for version 1990 1.20 /// entry PRFSEQDB number 10018 history cb 01/20/87 response received from Y.Seto fm 04/07/87 initial entry gk 05/01/90 updated entry from returned questionnaire status response res.nam Dr. Yasuhiko Seto res.add Protein Research Foundation 4-1-2 Ina Minoh-shi, Osaka 562 JAPAN res.tel 072-29-2040 res.net - gen.nam Dr. Yasuhiko Seto gen.add Protein Research Foundation 4-1-2 Ina Minoh-shi, Osaka 562 JAPAN gen.tel 072-29-2040 gen.net - con.nam Dr. Yasuhiko Seto con.add Protein Research Foundation 4-1-2 Ina Minoh-shi, Osaka 562 JAPAN con.tel 072-29-2040 con.net - acc.nam Dr. Yasuhiko Seto acc.add Protein Research Foundation 4-1-2 Ina Minoh-shi, Osaka 562 JAPAN acc.tel 072-29-2040 acc.net - name.now PRF/SEQDB nam.alt Protein Research Foundation Sequence Database nam.bad - source literature funding - citation [1] Oxford Press, Oxford, (in press). [2] Seto,Y., Nozaki,Y., Sakakibara,S. (1986) Efficient production of protein sequence data base and its problems. 29, pp. 195-209. charter PRFLITDB started as a secondary journal called Peptide Information, containing bibliographic data and telegram-like abstracts of papers related to peptide research. In 1979, it was compiled by computer and was called PRFLITDB. Its domain is now both peptide and protein literature, with over 1000 journals being routinely checked and containing check tags for fact data, such as sequence data, NMR data, Kcat mutation data and modification in amino acid sequences. cross.name PRFLITDB; PRF; PRFSEQDB data.pri amino acid sequences data.sec [amino acid sequence] functional features; [biological] literature citations hardware Data General op.sys AOS/VS dbms in-house language APL software - format linetype record access membership charge with use of system updates every months con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl yes acc.mag yes acc.flp yes acc.elm yes acc.pap yes byt.all 60000000 byt.pri 60000000 ent.pri 123822 comment - /// entry PROSITE number 10086 history gk 04/18/90 initial entry status response res.nam Dr. Amos Bairoch res.add Department de Biochimie Medicale C.M.U. 1 rue Michel Servet 1211 Geneva 4 SWITZERLAND res.tel [011-41] 22-61-84-92 res.net bairoch@cgecmu51.bitnet gen.nam Dr. Amos Bairoch gen.add Departement de Biochimie Medicale C.M.U. 1 rue Michel Servet 1211 Geneva 4 SWITZERLAND gen.tel [011-41] 22-61-84-92 gen.net bairoch@cgecmu51.bitnet con.nam Dr. Amos Bairoch con.add Departement de Biochimie Medicale C.M.U. 1 rue Michel Servet 1211 Geneva 4 SWITZERLAND con.tel [011-41] 22-61-84-92 con.net bairoch@cgecmu51.bitnet acc.nam Dr. Amos Bairoch acc.add Departement de Biochimie Medicale C.M.U. 1 rue Michel Servet 1211 Geneva 4 SWITZERLAND acc.tel [011-41] 22-61-84-92 acc.net bairoch@cgecmu51.bitnet name.now PROSITE nam.alt - nam.bad - source literature funding in house citation - charter PROSITE seeks to be a compilation of biologically significant protein sequence patterns. cross.name SWISSPROT data.pri amino acid [patterns] data.sec index terms hardware IBM PC/AT op.sys PC/MS-DOS dbms PC/Gene language - software - format Flat file format access no limitations updates every six months con.onl no con.mag no con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm yes acc.pap yes byt.all 500000 byt.pri 2000 ent.pri 300 comment PROSITE is distributed along with SWISS-PROT by the EMBL, both on tape and on CD-ROM. /// entry PSEQIP number 10019 history cb 02/01/87 response received from J.Claverie fm 04/07/87 initial entry status response res.nam Dr. J. Claverie res.add Institut Pasteur 28 rue du Docteur Roux Paris, Cedex 15 75724 FRANCE res.tel [011-33] 1-45-68-85-10 res.net - gen.nam Dr. Isabelle Sauvaget gen.add Institut Pasteur 28 rue du Docteur Roux Paris, Cedex 15 75724 FRANCE gen.tel [011-33] 1-45-68-85-09 gen.net - con.nam - con.add - con.tel - con.net - acc.nam Dr. Isabelle Sauvaget acc.add Institut Pasteur 28 rue du Docteur Roux Paris, Cedex 15 75724 FRANCE acc.tel [011-33] 1-45-68-85-09 acc.net - name.now PseqIP nam.alt - nam.bad - source other databases (NEWAT, PIR, PSD (Kyoto U.), PTG) funding Institut Pasteur citation Claverie,J., Bricault,L. (1986) PseqIP: A nonredundant and exhaustive protein sequence data bank generated from four major collections. 1, pp. 60-65. charter PSEQIP is a transient laboratory effort for compiling and dispersing up to date, complete, non-overlapping protein sequence data based on data from other established databases. cross.name - data.pri amino acid sequences data.sec index terms hardware Data General MV8000 op.sys AOS/VS dbms in-house language FORTRAN, C software C language package (for data search, entry exTracter, database installer; written in C) format flat text file: similar to NEWAT, PSD, PIR and PGTRANS access Free for academics, price to be negotiated for profit companies updates quarterly con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl yes acc.mag yes acc.flp no acc.elm no acc.pap no byt.all 6880169 byt.pri 1535569 ent.pri 6329 comment - /// entry PSS number 10097 history gk 06/19/90 initial entry status response res.nam Dr. Akira Tsugita res.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN res.tel [011-81] 471-23-9777 res.net ex5292@jpnsut30.bitnet gen.nam Dr. Akira Tsugita gen.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN gen.tel [011-81] 471-23-9777 gen.net ex5292@jpnsut30.bitnet con.nam Dr. Akira Tsugita con.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN con.tel [011-81] 471-23-9777 con.net ex5292@jpnsut30.bitnet acc.nam Dr. Akira Tsugita acc.add Research Institute for Biosciences Science University of Tokyo Yamazaki, Noda 278 JAPAN acc.tel [011-81] 471-23-9777 acc.net ex5292@jpnsut30.bitnet name.now Protein Secondary Structure Database nam.alt PSS nam.bad - source PIR; PDB funding Japanese government; research funds; donations citation - charter PSS establishes a correlation between PDB and PIR which allows for retrieval of any desired fragment sequence for statistical analysis. cross.name JIPIDB; JIPIDP data.pri nucleotide sequences; amino acid sequences data.sec protein [crystal composition]; secondary structure features [protein] hardware VAX 11/750 op.sys VMS dbms in-house language Fortran software in-house (for dbms; written in Fortran) format - access no limitations updates 1 per year con.onl yes con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm no acc.pap no byt.all - byt.pri - ent.pri 200 comment - /// entry PTG number 10020 history cb 11/20/86 response received from J.Fickett fm 04/07/87 initial entry gk 04/18/90 updated entry from returned questionnaire status response res.nam David Lewis res.add MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. res.tel (505) 667-8982 res.net dgl@life.lanl.gov gen.nam Dr. Christian Burks gen.add T-10, MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. gen.tel (505) 667-6683 gen.net cb@lanl.gov or limb@lanl.gov or genbank@lanl.gov con.nam - con.add - con.tel - con.net - acc.nam Dr. Christian Burks acc.add T-10, MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. acc.tel (505) 667-6683 acc.net cb@lanl.gov or limb@lanl.gov or genbank@lanl.gov name.now Protein Translation of GENBANK nam.alt PTG; PGtrans nam.bad - source other database (GENBANK) funding - citation Fickett,J. (1986) Correct transmission of protein coding regions in GenBank. 11, p. 190. charter PTG provides correct, automatic translation of all experimentally determined protein coding regions annotated in GENBANK. cross.name GENBANK data.pri amino acid sequences data.sec [nucleotide sequence] functional features; index terms; [molecular biology] literature citations; taxonomic classification hardware Sun op.sys Sun OS 4.0 dbms In House language C software SEQEXT/PEPTTR (for translating protein coding regions in GenBank; written in C) format Only the translation program, and not the translation data, is distributed access no limitations updates every six weeks con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl no acc.mag yes acc.flp yes acc.elm yes acc.pap no byt.all 5000000 byt.pri - ent.pri 4000 comment - /// entry QTDGPD number 10021 history cb 01/07/87 initial entry cb 01/27/87 response received from J. Garrels gk 03/19/90 updated entry from returned questionnaire status response res.nam Gerald Latter res.add Cold Spring Harbor Laboratory P.O. Box 100 Cold Spring Harbor, NY 11724 U.S.A. res.tel (516) 367-8356 res.net latter@cshlab.bitnet gen.nam Gerald Latter gen.add Cold Spring Harbor Laboratory P.O. Box 100 Cold Spring Harbor, NY 11724 U.S.A. gen.tel (516) 367-8356 gen.net latter@cshlab.bitnet con.nam Dr. James Garrels con.add Cold Spring Harbor Laboratory P.O. Box 100 Cold Spring Harbor, NY 11724 U.S.A. con.tel (516) 367-8356 con.net jg@csglab.bitnet acc.nam Dr. James Garrels acc.add Cold Spring Harbor Laboratory P.O. Box 100 Cold Spring Harbor, NY 11724 U.S.A. acc.tel (516) 367-8356 acc.net jg@csglab.bitnet name.now Quest 2D Gel Protein Database nam.alt QTDGPD nam.bad - source - funding N.I.H. Resource Grant citation [1] Proujan,B. (1988) Research Service: Protein Databases Available. Feb., pp. 13-14. [2] Proujan,B. (1989) The REF52 Database. 264no9, pp. 5283-5298. charter The major aim is to identify many of the spots on the protein map with basic characterizations of the rat, mouse and yeast cell protein patterns including basic regulatory responses, phosphorylation patterns of subcellular fractions and turnover rates. The gels have been specially formulated to routinely provide high resolution and reproducibility. cross.name - data.pri gel electrophoretic data [protein, spot representation] data.sec gel electrophoretic data [protein, spot coordinates]; gel electrophoretic data [protein, spot quality]; [protein] molecular properties hardware SUN op.sys UNIX dbms Protein Databases Inc. dbms language C software - format - access available on a collaborative basis updates daily con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl no acc.mag yes acc.flp no acc.elm no acc.pap yes byt.all 10000000 byt.pri 400000 ent.pri 200000 comment QTDGPD accepts 2D gel samples to be analyzed and entered into the database. The ent.pri figure is for 100 gels with 2,000 spots each. /// entry RED number 10022 history cb 01/20/87 response received from R.Roberts fm 04/07/87 initial entry jl 12/12/87 address & phone confirmed by e-mail jl 11/06/89 added 1987 citation gk 02/06/90 updated from questionnaire status response res.nam Dr. Rich Roberts res.add Cold Spring Harbor Laboratory P.O. Box 100 Cold Spring Harbor, NY 11724 U.S.A. res.tel (516) 367-8388 res.net roberts@cshlab.bitnet gen.nam Dr. Rich Roberts gen.add Cold Spring Harbor Laboratory P.O. Box 100 Cold Spring Harbor, NY 11724 U.S.A. gen.tel (516) 367-8388 gen.net roberts@cshlab.bitnet con.nam Dr. Rich Roberts con.add Cold Spring Harbor Laboratory P.O. Box 100 Cold Spring Harbor, NY 11724 U.S.A. con.tel (516) 367-8388 con.net roberts@cshlab.bitnet acc.nam Dr. Rich Roberts acc.add Cold Spring Harbor Laboratory P.O. Box 100 Cold Spring Harbor, NY 11724 U.S.A. acc.tel (516) 367-8388 acc.net roberts@cshlab.bitnet name.now Restriction Enzyme Database nam.alt REDBASE nam.bad - source literature; unpublished information funding NIH citation [1] Roberts,R. (1985) Restriction and modification enzymes and their recognition sequences. 13, pp. r165-r200. [2] Roberts,R. (1987) Restriction enzymes and their isoschizomers. 15, pp. r189-r217. [3] Roberts,R. (1989) Restriction enzymes and their isoschizomers. 17, pp. r347-r387. charter Encompasses information about restriction endonucleases, including recognition sequences, cleavage sites, strains, and literature references. cross.name - data.pri restriction enzymes data.sec [restriction enzyme] functional features; literature abstracts; literature citations; [restriction enzyme isolation] methods hardware SUN op.sys UNIX dbms ORACLE (soon to be SYBASE) language - software - format flat text file: line type format access no limitations updates daily con.onl yes con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm yes acc.pap yes byt.all 15000000 byt.pri 13000 ent.pri 1300 comment - /// entry RFLPD number 10057 history jl 01/29/88 initial entry from Bionet-bb message jl 02/08/88 sent him a questionnaire gk 05/10/90 updated entry from returned questionnaire status response res.nam Bob Cottingham res.add Centre d'Etude du Polymorphisme Humain 27 rue Juliette Dodu Paris 75010 FRANCE res.tel 011-33-1-42-49-98-67 res.net BC@FRCEPH51.bitnet gen.nam Bob Cottingham gen.add Centre d'Etude du Polymorphisme Humain 27 rue Juliette Dodu Paris 75010 FRANCE gen.tel 011-33-1-42-49-98-67 gen.net BC@FRCEPH51.bitnet con.nam Bob Cottingham con.add Centre d'Etude du Polymorphisme Humain 27 rue Juliette Dodu Paris 75010 FRANCE con.tel 011-33-1-42-49-98-67 con.net BC@FRCEPH51.bitnet acc.nam Bob Cottingham acc.add Centre d'Etude du Polymorphisme Humain 27 rue Juliette Dodu Paris 75010 FRANCE acc.tel 011-33-1-42-49-98-67 acc.net BC@FRCEPH51.bitnet name.now CEPH Public Database nam.alt - nam.bad - source CEPH collaborating laboratories funding - citation Dausset,J., Cann,H., Cohen,D., Lathrop,M., Lalouel,J., White,J. (1990) Center d`Etude du Polymorphisme Humain (CEPH): Collaborative Genetic Mappin of the Human Genome. 6, pp. 575-577. charter RFLPD's goal is to collect a large number of polymorphic markers on a common set of families for the development of a high resolution genetic map. cross.name - data.pri polymorphic markers [RLFPs] data.sec genotypes [CEPH panel families] hardware DEC VAX; Sun op.sys VMS; UNIX dbms CEPH; SYBASE language PASCAL; software - format - access - updates annually con.onl no con.mag no con.flp yes con.elm no con.pap no acc.onl no acc.mag yes acc.flp yes acc.elm no acc.pap yes byt.all 1500000 byt.pri - ent.pri 744 comment - /// entry SEQANALREF number 10055 history jl 02/29/88 initial entry; e-mail form sent by A.Bairoch gk 04/18/90 updated entry from e-mail message status response res.nam Dr. Amos Bairoch res.add Departement de Biochimie Medicale C.M.U. 1 rue Michel Servet 1211 Geneva 4 SWITZERLAND res.tel [011-41] 22-61-84-92 res.net bairoch@cgecmu51.bitnet gen.nam Dr. Amos Bairoch gen.add Departement de Biochimie Medicale C.M.U. 1 rue Michel Servet 1211 Geneva 4 SWITZERLAND gen.tel [011-41] 22-61-84-92 gen.net bairoch@cgecmu51.bitnet con.nam Dr. Amos Bairoch con.add Departement de Biochimie Medicale C.M.U. 1 rue Michel Servet 1211 Geneva 4 SWITZERLAND con.tel [011-41] 22-61-84-92 con.net bairoch@cgecmu51.bitnet acc.nam Dr. Amos Bairoch acc.add Departement de Biochimie Medicale C.M.U. 1 rue Michel Servet 1211 Geneva 4 SWITZERLAND acc.tel [011-41] 22-61-84-92 acc.net bairoch@cgecmu51.bitnet name.now Sequence Analysis Literature Reference Data Bank nam.alt SEQANALREF nam.bad - source literature funding In house citation - charter SEQANALREF seeks to list all literature references relative to the field of sequence analysis. cross.name - data.pri [sequence analysis] literature citations data.sec index terms hardware IBM PC/AT op.sys PC/MS-DOS dbms - language - software - format similar to EMBL and SWISS-PROT databases. Uses same syntax. access no limitations updates every four months con.onl no con.mag no con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag no acc.flp yes acc.elm yes acc.pap no byt.all 300000 byt.pri 300000 ent.pri 1200 comment SEQANALREF floppy disks are available on IBM PC 360 Kb disks and IBM AT 1.2 Mb disks. /// entry SIGPEP number 10081 history fm 05/18/87 initial entry gmk 02/05/90 updated from returned questionnaire status response res.nam Dr. Gunnar von Heijne res.add Theoretical Physics Royal Institute of Technology Stockholm S-10044 SWEDEN res.tel [011-46] 8-787-7172 res.net - gen.nam Dr. Gunnar von Heijne gen.add Theoretical Physics Royal Institute of Technology Stockholm S-10044 SWEDEN gen.tel [011-46] 8-787-7172 gen.net - con.nam Dr. Gunnar von Heijne con.add Theoretical Physics Royal Institute of Technology Stockholm S-10044 SWEDEN con.tel [011-46] 8-787-7172 con.net - acc.nam Dr. Gunnar von Heijne acc.add Theoretical Physics Royal Institute of Technology Stockholm S-10044 SWEDEN acc.tel [011-46] 8-787-7172 acc.net - name.now SIGPEP nam.alt Sequence Database for Secretory Signal Peptides nam.bad - source literature funding Swedish Natural Science Research Council citation von Heijne,G. (1987) SIGPEP: a sequence database for secretory signal peptides. 1, pp. 41-42. charter SIGPEP's goal is to provide a collection of signal peptides for statistical analysis cross.name - data.pri [signal peptide] amino acid sequences data.sec literature citations hardware Apple IIE; Apple III; Macintosh Plus op.sys Ms File dbms Microsoft File; Microsoft Excel; Ms File language - software - format flat file: line type record access no limitations updates continually con.onl no con.mag no con.flp yes con.elm no con.pap yes acc.onl no acc.mag no acc.flp yes acc.elm no acc.pap yes byt.all 250000 byt.pri 30000 ent.pri 1300 comment - /// entry SIGSCAN number 10099 history gk 07/10/90 initial entry status response res.nam Dan Prestridge res.add T-10, MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. res.tel (505) 665-2958 res.net DXP%LIFE@LANL.GOV gen.nam Dan Prestridge gen.add T-10, MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. gen.tel (505) 665-2958 gen.net DXP%LIFE@LANL.GOV con.nam Dan Prestridge con.add T-10, MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. con.tel (505) 665-2958 con.net DXP%LIFE@LANL.GOV acc.nam Dan Prestridge acc.add T-10, MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. acc.tel (505) 665-2958 acc.net DXP%LIFE@LANL.GOV name.now Signal Scan nam.alt Transcriptional Factor Database nam.bad - source journal articles funding NIH; Duke University citation Prestridge,D. (1990) Signal Scan: A computer program that scans DNA sequences for eukaroyotic transcriptional elements. (in press). charter Signal Scan is a program which has been developed to aid the molecular biologist in determining what eukaryotic transcription factor elements, and other significant elements, may exist in a DNA sequence. To accomplish this a database of these elements has been innitiated. This program, at present, is most useful for analyzing mammalian sequences due to the prevalence of mammalian elements in the database. A list of elements may also be entered by the user. Signal Scan uses both elements derived from biochemical characterization and elements from derived consensus sequences to match against a user input DNA sequence. While any sequence element matching an element in the database will be reported by the program, the determination of the biological relevance of the element is left up to the investigator. cross.name - data.pri nucleotide sequences [transcriptional element] data.sec literature citation [transcriptional element]; proteins [transcription factor, names] hardware IBM PC; Sun 4 op.sys MS DOS; UNIX dbms - language - software - format - access no limitations updates 1/year con.onl no con.mag no con.flp no con.elm yes con.pap yes acc.onl no acc.mag no acc.flp yes acc.elm yes acc.pap no byt.all 11000 byt.pri 11000 ent.pri 178 comment - /// entry SRRSD number 10024 history cb 11/18/86 response received from D.Davison fm 04/07/87 initial entry jl 12/12/87 address & phone confirmed by e-mail jl 03/07/88 new bitnet address given by Jack Chappelear status response res.nam Dr. Dan Davison res.add T-10, MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. res.tel (505) 665-1355 res.net dd@lanl.gov gen.nam Dr. George Fox gen.add Dep't of Biochemical Science Univ. of Houston 4800 Calhoun Houston, TX 77004 U.S.A. gen.tel (713) 749-3980 or (713) 749-2830 gen.net fox@uhrcc2.bitnet or fox@uhrcc2.crcc.uh.edu con.nam Dr. George Fox con.add Dep't of Biochemical Science Univ. of Houston 4800 Calhoun Houston, TX 77004 U.S.A. con.tel (713) 749-3980 or (713) 749-2830 con.net fox@uhrcc2.bitnet or fox@uhrcc2.crcc.uh.edu acc.nam Dr. George Fox acc.add Dep't of Biochemical Science Univ. of Houston 4800 Calhoun Houston, TX 77004 U.S.A. acc.tel (713) 749-3980 or (713) 749-2830 acc.net fox@uhrcc2.bitnet or fox@uhrcc2.crcc.uh.edu name.now 16S Ribosomal RNA Sequence Database nam.alt 16S rRNA; small ribosomal subunit RNA; 30S subparticle rRNA nam.bad - source literature; unpublished information funding N.I.H.; NASA citation - charter Covers all major and minor journals published in English, French, or German. Most data now comes from authors prior to, and sometimes in lieu of, publications. cross.name GENBANK; EMBL data.pri [16S rRNA] nucleotide sequences data.sec [16S rRNA nucleotide sequence] functional features hardware MICRO VAX II op.sys VMS/OS 4.2 dbms in-house language FORTRAN software Analysis package (for data manipulation) format structure only compatible with DEC VAX Systems access no limitations (unless contributors request otherwise) updates weekly con.onl yes con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp no acc.elm yes acc.pap yes byt.all 250000 byt.pri 130000 ent.pri 110 comment The database is an integrated environment consisting of an editor and some analysis programs. It keeps data in a very peculiar form (variable length, variable blocked records in RMS) which can be distributed in many forms (Stade, BIONET, GENBANK et al.) via most types of media. Electronic mail contribution to SRRSD can be made via Bitnet and UUCP. Electronic mail access is available via Bitnet, but should only be used as a last resort. /// entry SRSRSC number 10025 history cb 12/10/86 response received from R.De Wachter fm 04/07/87 initial entry gk 02/22/90 updated from returned questionnaire status response res.nam Dr. Rupert De Wachter res.add Departement Biochemie Universiteit Antwerpen (UIA) Universiteitsplein 1 B-2610 Antwerpen BELGIUM res.tel [011-32] 3-82022319 res.net DEWACHTER@CCV.UIA.AC.BE gen.nam Dr. Rupert De Wachter gen.add Departement Biochemie Universiteit Antwerpen (UIA) Universiteitsplein 1 B-2610 Antwerpen BELGIUM gen.tel [011-32] 3-82022319 gen.net DEWACHTER@CCV.UIA.AC.BE con.nam Dr. Rupert De Wachter con.add Departement Biochemie Universiteit Antwerpen (UIA) Universiteitsplein 1 B-2610 Antwerpen BELGIUM con.tel [011-32] 3-82022319 con.net DEWACHTER@CCV.UIA.AC.BE acc.nam Dr. Rupert De Wachter acc.add Departement Biochemie Universiteit Antwerpen (UIA) Universiteitsplein 1 B-2610 Antwerpen BELGIUM acc.tel [011-32] 3-82022319 acc.net DEWACHTER@CCV.UIA.AC.BE name.now Small Ribosomal Subunit RNA Sequence Compilation nam.alt SRSRSC nam.bad - source literature; personal communication; EMBL Nucleotide Sequence Library (Heidelberg); GENBANK funding University of Antwerp (UIA); NFWO (Belgian foundation for scientific research); DPWB (Belgian Office of Science Policy Programming) citation [1] Huysmans,E., De Wachter,R. (1986) Compilation of small ribosomal subunit RNA sequences. 14, pp. r73-r118. [2] Dams,E., Hendriks,L., Van de Peer,Y., Smits,G., Vandenbempt,I., De Wachter,R. (1988) Compilation of Small Ribosomal Subunit RNA Sequences. 16, pp. r87-r173. [3] Van de Peer,Y., Hendriks,L., De Wachter,R. (1990) Compilation of Small Ribosomal Subunit RNA Sequences. (in press). charter SRSRSC seeks to list all published small ribosomal subunit RNA sequences. cross.name - data.pri [small subunit rRNA] nucleotide sequences data.sec [sequence] sources; nucleotide sequence; [small subunit rRNA] secondary structure features; [molecular biology] literature citations hardware Micro Vax 2 op.sys VMS 5.1 dbms in-house language FORTRAN software - format Alignment of nucleotide sequences for optimal homology access no limitations updates updated when a new sequence is published con.onl yes con.mag no con.flp yes con.elm no con.pap yes acc.onl no acc.mag yes acc.flp yes acc.elm no acc.pap yes byt.all 2400000 byt.pri 1123200 ent.pri 270 comment - /// entry SVFORTYMUT number 10068 history jl 03/10/89 received information on SVFORTYMUT from Bionet jl 10/25/89 initial entry gk 06/18/90 updated entry from returned questionnaire status response res.nam Dr. James Pipas res.add Dep't of Biological Sciences Univ. of Pittsburgh Pittsburgh, PA 15260 U.S.A. res.tel (412) 624-4691 res.net jpipas@bionet-20.arpa gen.nam Dr. James Pipas gen.add Dep't of Biological Sciences Univ. of Pittsburgh Pittsburgh, PA 15260 U.S.A. gen.tel (412) 624-4691 gen.net jpipas@bionet-20.arpa con.nam - con.add - con.tel - con.net - acc.nam - acc.add - acc.tel - acc.net - name.now SV40 Large T Antigen Mutant Database nam.alt - nam.bad - source individual investigators funding - citation Pipas,J. (1988) SV40 Large T Antigen Mutant Data Base. 24, p. 1147. charter - cross.name - data.pri [SV40 large T antigen deletion & insertion] mutants; [unsequenced SV40 large T antigen deletion & insertion] mutants; [SV40 large T antigen mutant] amino acid substitutions; [unsequenced SV40 large T antigen mutant] amino acid substitutions; [truncated SV40 large T antigen mutants] mutants data.sec literature citations; [SV40 large T antigen mutant parents] mutants hardware Macintosh op.sys - dbms - language - software - format line type format access no limitations updates - con.onl no con.mag no con.flp yes con.elm no con.pap no acc.onl yes acc.mag no acc.flp no acc.elm no acc.pap no byt.all - byt.pri - ent.pri - comment SVFORTYMUT consists of five files corresponding to each of the five different data.pri entries. /// entry SWISSPROT number 10023 history cb 01/21/87 response received from A.Bairoch fm 04/07/87 initial entry jl 02/29/88 updated with e-mail sent by A.Bairoch gk 04/18/90 updated entry from e-mail status response res.nam Dr. Amos Bairoch res.add Departement de Biochimie Medicale C.M.U. 1 rue Michel Servet 1211 Geneva 4 SWITZERLAND res.tel [011-41] 22-61-84-92 res.net bairoch@cgecmu51.bitnet gen.nam Dr. Amos Bairoch gen.add Departement de Biochimie Medicale C.M.U. 1 rue Michel Servet 1211 Geneva 4 SWITZERLAND gen.tel [011-41] 22-61-84-92 gen.net bairoch@cgecmu51.bitnet con.nam EMBL Data Library Submissions con.add European Molecular Biology Laboratory Postfach 10.2209 Heidelberg 6900 WEST GERMANY con.tel [011-49] 6221-387-258 con.net datasub@embl.bitnet acc.nam EMBL Data Library acc.add European Molecular Biology Laboratory Postfach 10.2209 Heidelberg 6900 WEST GERMANY acc.tel [011-49] 6221-387-258 acc.net datalib@embl.bitnet name.now SWISS-PROT Protein Sequence Data Bank nam.alt SWISS-PROT; SPROT; EMBL/SWIS-PROT nam.bad - source other databases (PIR, EMBL); literature funding In house citation - charter SWISS-PROT seeks to list all protein sequences and related data. cross.name PIR; PDB; PROSITE; HIVSSA; EMBL; GENBANK data.pri amino acid sequences data.sec [amino acid sequence] functional features; index terms hardware IBM PC/AT op.sys PC/MS-DOS dbms PC/Gene language Microsoft Quickbasic, Microsoft C software - format similar to EMBL access no limitations updates every four months con.onl no con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp yes acc.elm yes acc.pap no byt.all 20000000 byt.pri 4500000 ent.pri 14000 comment SWISS-PROT is distributed by the EMBL on tape and on CD-ROM. SWISS-PROT is available on 1.2 Mb and 1.4 Mb disks through secondary distributers ( such as IntelliGenetics). /// entry TFD number 10088 history gk 04/25/90 initial entry status response res.nam David Ghosh res.add Building 38A NCBI/NLM/NIH 8600 Rockville Pike Bethesda, MD 20894 U.S.A. res.tel - res.net ghosh@ncbi.nlm.nih.gov gen.nam David Ghosh gen.add Building 38A NCBI/NLM/NIH 8600 Rockville Pike Bethesda, MD 20894 U.S.A. gen.tel - gen.net ghosh@ncbi.nlm.nih.gov con.nam - con.add - con.tel - con.net - acc.nam - acc.add - acc.tel - acc.net - name.now Transcription Factor Database nam.alt TFD nam.bad - source GenBank; primary literature funding NIH citation Ghosh,D. (1990) A Relational Database of Transcription Factors. 18, pp. 1749-1756. charter The purpose of this database is to organize information regarding transcription factors and their cognate sequences. cross.name GENBANK; MEDLINE data.pri nucleotide sequences; amino acid sequences; proteins [transcription factor, names] data.sec sequence location; literature citations hardware Sun4/260; IBM-AT op.sys UNIX; MS DOS dbms Oracle; Sybase; dBASE language - software - format Fixed-length record ASCII text files & data dictionaries access no limitations updates six months con.onl no con.mag no con.flp no con.elm no con.pap yes acc.onl no acc.mag no acc.flp yes acc.elm yes acc.pap no byt.all 1200000 byt.pri - ent.pri 2160 comment Entries into this database are limited to sequences and data accepted for publication in a peer-review journal. /// entry TOXNET number 10049 history fm 08/04/87 initial entry fm 08/04/87 sent questionnaire to B.Vasta jl 01/06/88 sent another questionnaire to B.Vasta jl 01/20/88 received questionnaire, made entry gk 02/20/90 updated from returned questionnaire status response res.nam Dr. Philip Wexler res.add 8600 Rockville Pike National Library of Medicine Bethesda, MD 20894 U.S.A. res.tel (301) 496-6531 res.net - gen.nam Dr. Philip Wexler gen.add 8600 Rockville Pike National Library of Medicine Bethesda, MD 20894 U.S.A. gen.tel (301) 496-6531 gen.net - con.nam - con.add - con.tel - con.net - acc.nam - acc.add - acc.tel - acc.net - name.now Toxicology Data Network nam.alt TOXNET nam.bad - source HSDB (Hazardous Substances Data Bank); CCRIS (Chemical Carcinogenesis Research Information System); RTECS (Registry of Toxic Effects of Chemical Substances); ETICBACK (Environmental Technology Information Center Backfile); DBIR (Directory of Biotechnology Information Resources); TRI (Toxic Chemical Release Inventory); IRIS (Integrated Risk Information System) funding U.S. government citation - charter Each of TOXNET's files concentrates on chemical and physical properties of potentially hazardous chemicals. cross.name - data.pri [toxic] chemicals data.sec toxin properties; [chemicals] hazardous properties; [chemical] toxicity hardware Data General MV 1000 minicomputers op.sys MIIS dbms MIIS language - software - format - access users must get Medlars access codes from N.L.M. updates continuously con.onl no con.mag no con.flp no con.elm no con.pap no acc.onl yes acc.mag no acc.flp no acc.elm no acc.pap no byt.all - byt.pri - ent.pri - comment More information on TOXNET is available in the N.L.M. Online Services Reference Manual. /// entry TRF number 10048 history fm 08/04/87 response received from N.Roseman fm 08/04/87 initial entry jl 05/31/88 updated with info received from B.Howey and N.Roseman gk 02/20/90 updated from returned questionnaire status response res.nam Dr. Robert Howey res.add BIOSIS 2100 Arch Street Philadelphia, PA 19103-1399 U.S.A. res.tel (215) 587-4917 res.net 42:cdt0018 (CODATA/Dialcom) gen.nam Dr. Robert Howey gen.add BIOSIS 2100 Arch Street Philadelphia, PA 19103-1399 U.S.A. gen.tel (215) 587-4917 gen.net 42:cdt0018 (CODATA/Dialcom) con.nam Dr. Robert Howey con.add BIOSIS 2100 Arch Street Philadelphia, PA 19103-1399 U.S.A. con.tel (215) 587-4917 con.net 42:cdt0018 (CODATA/Dialcom) acc.nam Dr. Robert Howey acc.add BIOSIS 2100 Arch Street Philadelphia, PA 19103-1399 U.S.A. acc.tel (215) 587-4917 acc.net 42:cdt0018 (CODATA/Dialcom) name.now The Taxonomic Reference File at BIOSIS nam.alt TRF; BRBN; BIOSIS Register of Bacterial Nomenclature nam.bad - source other database (BIOSISP); BIOSIS in-house bacterial authority file; literature (Int'l Journal of Systematic Bacteriology (IJSB), IJSB validation lists, ATCC quarterly newsletter); EMICBACK (Envirnmental Mutagenesis Information Center Backfile) funding BIOSIS operating budget citation Walat,J. (1986) The Biosis taxonomic reference file: a micro-computer based pilot project for an organism data network. 2(4), pp. 10-14. charter The TRF is made up of several kinds of files: the Name File and Hierarchy Files. The Name File has about 12,600 bacterial names. The Bibliographic File currently contains about 13,300 bacterial taxonomy references. The Hierarchy Files indicate relative taxonomic placement according to four schemes. The bibliographic component is not available online. Searches can be done on request. cross.name - data.pri organisms [bacterial] data.sec index terms; taxonomic classification; organisms [bacterial, synonyms] hardware NEC APC-IV Powermate2 PC (online); IBM 4381 mainframe (maintenance) op.sys DOS (PC); CICS/MVS (mainframe) dbms Oracle (dbms for PC); CICS (dbms for mainframe) language C, SQL; PL/1, BAL software - format TRF tries to accommodate any format for PCs for limited subsets of data only access no limitations updates quarterly con.onl no con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag no acc.flp yes acc.elm no acc.pap no byt.all 6500000 byt.pri - ent.pri 12600 comment Presently the TRF is available online at no cost. The phone number is 1-215-972-6759. In addition to the data files already mentioned, TRF plans to make available 'related files' of information developed by other sources. The catalog of the Bacillus Genetic Stock Center at Ohio State University and the Iowa State Pattee Staphylococcus Genetic Stock Center are also available. A number of other databases are available for searching or downloading via the system. /// entry TRNAC number 10026 history cb 12/15/86 response received from M.Sprinzl fm 04/07/87 initial entry jl 02/03/88 renamed TRNAC from TRSD; charter improvised gk 03/09/90 updated entry from returned questionnaire status response res.nam Dr. Mathias Sprinzl res.add Dep't of Biochemistry University of Bayreuth Universitatsstrasse 30 Bayreuth D-8580 WEST GERMANY res.tel [011-49] 921-552-668 res.net datex-p 45921040258 gen.nam Dr. Mathias Sprinzl gen.add Dep't of Biochemistry University of Bayreuth Universitatsstrasse 30 Bayreuth D-8580 WEST GERMANY gen.tel [011-49] 921-552-668 gen.net datex-p 45921040258 con.nam Dr. Mathias Sprinzl con.add Dep't of Biochemistry University of Bayreuth Universitatsstrasse 30 Bayreuth D-8580 WEST GERMANY con.tel [011-49] 921-552-668 con.net datex-p 45921040258 acc.nam Dr. Mathias Sprinzl acc.add Dep't of Biochemistry University of Bayreuth Universitatsstrasse 30 Bayreuth D-8580 WEST GERMANY acc.tel [011-49] 921-552-668 acc.net datex-p 45921040258 name.now tRNA Compilation nam.alt Compilation of tRNA genes nam.bad - source literature funding University of Bayreuth citation [1] Sprinzl,M., Moll,J., Meissner,F., Hartmann,T. (1985) Compilation of tRNA sequences. 13, pp. r1-r50. [2] Sprinzl,M., Vorderwuelbecke,T., Hartmann,T. (1985) Compilation of sequences of tRNA genes. 13, pp. r51-r104. [3] Sprinzl,M., Hartmann,T., Weber,J., Blank,J., Zeidler,R. (1989) Compilation of tRNA sequences and sequences of tTNA genes. 17, pp. r1-r172. charter TRNAC seeks to compile published tRNA sequences. cross.name EMBL data.pri [tRNA] nucleotide sequences; [tRNA gene] nucleotide sequences; sequence alignments data.sec [molecular biology] literature citations; [tRNA] secondary structures; [tRNA] sources hardware IBM PC AT op.sys MS-DOS 3.3 dbms in-house language FORTRAN, Pascal software - format Pascal record file access no limitations updates every six months con.onl no con.mag no con.flp yes con.elm no con.pap yes acc.onl no acc.mag no acc.flp yes acc.elm no acc.pap yes byt.all 2250000 byt.pri 150000 ent.pri 1500 comment - /// entry VECTOR number 10036 history fm 06/08/87 initial entry fm 06/09/87 sent questionnaire to W.Gilbert fm 06/22/87 response received from W.Gilbert jl 12/09/87 new address & phone given over e-mail gk 04/16/90 updated entry for 2.0 status response res.nam Dr. William Gilbert res.add Room 211 Whitehead Institute Nine Cambridge Center Cambridge, MA 02142 U.S.A. res.tel (617) 258-5139 res.net gilbert@mitwibr.bitnet gen.nam Dr. William Gilbert gen.add Room 211 Whitehead Institute Nine Cambridge Center Cambridge, MA 02142 U.S.A. gen.tel (617) 258-5139 gen.net gilbert@mitwibr.bitnet con.nam Dr. William Gilbert con.add Room 211 Whitehead Institute Nine Cambridge Center Cambridge, MA 02142 U.S.A. con.tel (617) 258-5139 con.net gilbert@mitwibr.bitnet acc.nam Dr. William Gilbert acc.add Room 211 Whitehead Institute Nine Cambridge Center Cambridge, MA 02142 U.S.A. acc.tel (617) 258-5139 acc.net gilbert@mitwibr.bitnet name.now Cloning Vector Sequence Database nam.alt VECTOR Database; VECBASE (in Europe) nam.bad - source direct submission (by scientists at MIT and Max-Plank and from commercial sources); literature funding none citation - charter Data collection was done informally at MIT as a service to the MIT biological community of users. The database was donated to PIR which made it available. It was then taken to the Max-Plank Institute where additional sequences were added. cross.name GENBANK; EMBL data.pri [cloning vector] nucleotide sequences data.sec index terms; [molecular biology] literature citations; [cloning vector nucleotide sequence] base composition; [cloning vector] sources; [database] cross-references hardware VAX op.sys VMS dbms PIR's Create Program; NAQ language - software Exchange format conversion (for converting to PIR database format; written in FORTRAN) format PIR format ready for NAQ with VAX/VMS or flat files in CODATA and GCG format access no limitations updates yearly con.onl yes con.mag yes con.flp yes con.elm yes con.pap yes acc.onl yes acc.mag yes acc.flp yes acc.elm yes acc.pap yes byt.all 1500000 byt.pri 428947 ent.pri 105 comment Dr. Gilbert's Fax is: 617-258-5139. VECTOR is available on IBM-XT and Apple MAC+ disks and via Bitnet. /// INDEX OF DATA TERMS (LiMB Release 2.0) 3D coordinates ...BMR abstracts ...DIALOGMC abstracts [magazines] ...BCAD abstracts [newsletters] ...BCAD abstracts [newspapers] ...BCAD abstracts [press releases] ...BCAD abstracts [scientific journals] ...BCAD accession [germplasm samples] ...GRIN amino acid sequences ...JIPIDS, PRFSEQDB, PSEQIP, PTG, SWISSPROT, MIPS, PIR, EMBOPRO, TFD, JIPIDP, JIPIDSN, PSS, ECOLI, JIPIDB amino acid sequences [artificial variants] ...JIPIDV amino acid sequences [class covering pattern] ...MBCRR amino acid sequences [cluster trees] ...MBCRR amino acid sequences [diagnostic sequence patterns] ...MBCRR amino acid sequences [HIV] ...HIVSSA amino acid sequences [immunoglobulin] ...AANSPII amino acid sequences [pattern information content] ...MBCRR amino acid sequences [patterns] ...PROSITE amino acid sequences [properties in protein] ...AMINODB amino acid sequences [protein kinases] ...PKCDD amino acid sequences [signal peptide] ...SIGPEP amino acid sequences [wild-type] ...PMD amino acid substitutions [SV40 large T antigen mutant] ...SVFORTYMUT amino acid substitutions [unsequenced SV40 large T antigen mutant] ...SVFORTYMUT amino acid [loci] ...MBCRR annotation [protein] ...ECOLI antibodies [monoclonal] ...HDB antibody specificities ...AANSPII atomic coordinates [biomacromolecule] ...PDB atomic coordinates [small molecule] ...CCD authors/editors [books] ...BKS base composition [cloning vector nucleotide sequence] ...VECTOR base composition [host gene] ...DCT base composition [transposable element ORF] ...DCT biological activity and physical properties [variant] ...JIPIDV breakpoints ...IUDSC carbohydrate sequences ...CARBBANK catalytic activity ...ENZYME cell lines [characteristics] ...HGMCR cell lines [human] ...HGMCR chemical modification [amino acid] ...JIPIDV chemicals [toxic] ...TOXNET chromosome number [Drosophila] ...IUDSC chromosome rearrangements [D. melanogaster] ...DROSO clones [chromosome specific libraries] ...DRHPL clones [descriptions] ...DRHPL clones [distribution lists] ...DRHPL clones [human cDNA] ...DRHPL clones [human genomic] ...DRHPL clones [immuno-] ...HDB clones [library characterizations] ...DRHPL clones [mouse] ...MOUSE codon usage ...CUTG codon usage [Drosophila] ...DCT conferences ...BKS cross-references [database] ...DCT, JIPIDV, JIPIDB, JIPIDS, VECTOR cross-references [EMBL] ...EPD, EMBOPRO cross-references [GENBANK] ...CUTG cross-references [microbial strain database] ...MSDN cultures [curator] ...MICROGERM cultures [distribution] ...MICROGERM database access information ...DBIR, LIMB, MSDN database characteristics ...DBIR, LIMB, MSDN database contribution information ...LIMB, MSDN database maintenance [hardware] ...DBIR, LIMB database maintenance [software] ...DBIR, LIMB databases [biotechnology] ...DBIR databases [life science] ...BIOSISCONN databases [molecular biology] ...LIMB diseases [human inherited] ...OMIM DNA probes [human] ...HGML DNA samples [human cell line] ...HGMCR Drosophila [genotype] ...IUDSC enzymes [substrate modifications] ...LYSIS enzymes [cofactor] ...JIPIDB enzymes [EC numbers] ...MBCRR, ENZYME functional features [16S rRNA nucleotide sequence] ...SRRSD functional features [amino acid sequence, immunoglobulin] ...AANSPII functional features [amino acid sequence] ...JIPIDS, PRFSEQDB, SWISSPROT, MIPS, PIR, EMBOPRO functional features [biomacromolecule] ...PDB functional features [carbohydrate sequence] ...CARBBANK functional features [nucleotide sequence, immunoglobulin] ...AANSPII functional features [nucleotide sequence] ...DDBJ, EMBL, GENBANK, JIPIDS, PTG functional features [restriction enzyme] ...RED gel electrophoretic data [protein, spot coordinates] ...QTDGPD gel electrophoretic data [protein, spot quality] ...QTDGPD gel electrophoretic data [protein, spot representation] ...QTDGPD gene frequencies [domestic cat] ...CATGENE gene location ...JIPIDSN, ECOLI gene name ...JIPIDSN, ECOLI genes ...GDB genetic maps [C. elegans] ...CGC genetic maps [human] ...HGML, OMIM genetic maps [man on mouse homologous loci] ...MOUSEMAN genetic maps [man on mouse homology maps] ...MOUSEMAN genetic maps [mouse clone and probe] ...MOUSE genetic mutations [D. melanogaster] ...DROSO genotypes [CEPH panel families] ...RFLPD germplasm [evaluation information] ...GRIN germplasms ...MICROGERM hazardous properties [chemicals] ...TOXNET hybridomas ...HDB index terms ...CARBBANK, CASORF, DBIR, DDBJ, EMBL, GENBANK, HDB, HGMCR, HGML, JIPIDV, JIPIDS, PRFLITDB, PSEQIP, PTG, SEQANALREF, SWISSPROT, TRF, VECTOR, MIPS, PIR, EMBOPRO, EPD, PROSITE, ENZYME, OLIGONUC index terms [biological] ...BIOSISP, MEDLINE index terms [chemical] ...CAS index terms [medical] ...MEDLINE index terms [microbial strain] ...MSDN index terms [organizations] ...BCAD inventory information ...GRIN laboratories [computer capabilities] ...MICROGERM laboratories [focus] ...MICROGERM laboratories [location] ...PRCTR legume [conservation status] ...ILDIS legume [economic importance] ...ILDIS legume [geographical distribution] ...ILDIS legume [life form] ...ILDIS legume [name] ...ILDIS legume [notes] ...ILDIS legume [synonyms] ...ILDIS legume [tribe membership] ...ILDIS legume [vernacular names] ...ILDIS lipids [aqueous phase composition] ...LIPIDPHASE lipids [enthalpy change] ...LIPIDPHASE lipids [mesomorphic phase transition behavior] ...LIPIDPHASE lipids [miscibility properties] ...LIPIDPHASE lipids [transition temperature] ...LIPIDPHASE lipids [transition type] ...LIPIDPHASE literature abstracts ...RED, MEDLINE literature abstracts [amino acid sequence] ...PRFLITDB literature abstracts [biological] ...BIOSISP, MEDLINE literature abstracts [chemical] ...CAS literature abstracts [life sciences] ...CURRCONTS literature abstracts [medical] ...MEDLINE literature citations [crystallization] ...BMCD literature citations [transcriptional element] ...SIGSCAN literature citations ...CARBBANK, CGC, DIALOGMC, DRHPL, HDB, MICIS, RED, SIGPEP, SVFORTYMUT, OMIM, TFD, OLIGONUC, AANSPII, GDB, LIPIDPHASE literature citations [agriculture] ...AGRICOLA literature citations [AIDS] ...BIOSISCONN literature citations [amino acid sequence] ...PRFLITDB, MIPS, PIR literature citations [biological] ...BIOSISP, JIPIDS, MEDLINE, PRFSEQDB literature citations [biomacromolecule] ...PDB literature citations [chemical compound] ...NAPRALERT literature citations [chemical] ...CAS, CASORF literature citations [disease, human inherited] ...GDN literature citations [eukaryotic POL II promoter sequence] ...EPD literature citations [legume] ...ILDIS literature citations [life sciences] ...AGRICOLA, BIOSISCONN literature citations [medical] ...MEDLINE literature citations [molecular biology] ...AMINODB, DDBJ, EMBL, GENBANK, HGML, JIPIDV, LIMB, PTG, TRNAC, VECTOR, SRSRSC literature citations [names of organizations] ...BCAD literature citations [nucleotide sequence, cloned] ...GC literature citations [pharmacology] ...NAPRALERT literature citations [protein substrate cleavage site] ...LYSIS literature citations [sequence analysis] ...SEQANALREF literature citations [sequences] ...PKCDD literature citations [taxonomy] ...NAPRALERT methods ...LIPIDPHASE methods [amino acid mutagenizing] ...JIPIDV methods [restriction enzyme isolation] ...RED microbial strain collection information ...MINE microorganisms [cultured] ...MICIS microorganisms [history] ...MICIS molecular biological activity [protein] ...JIPIDB molecular formulae ...CASORF molecular properties [amino acid] ...AMINODB molecular properties [biomacromolecule] ...PDB molecular properties [protein] ...JIPIDV, QTDGPD molecular structure [chemical representations] ...CASORF mutants [expression system] ...PMD mutants [protein] ...PMD mutants [SV40 large T antigen deletion & insertion] ...SVFORTYMUT mutants [SV40 large T antigen mutant parents] ...SVFORTYMUT mutants [truncated SV40 large T antigen mutants] ...SVFORTYMUT mutants [wild-type activity or structure difference] ...PMD NMR [coupling constants] ...BMR NMR [experimental conditions] ...BMR NMR [NOEs] ...BMR NMR [shift assignments] ...BMR nucleotide sequence [features] ...ECOLI nucleotide sequences ...DDBJ, EMBL, GENBANK, JIPIDS, TFD, JIPIDP, JIPIDSN, PSS, ECOLI nucleotide sequences [16S rRNA] ...SRRSD nucleotide sequences [5S rRNA] ...BRD nucleotide sequences [chemically synthesized oligonucleotide] ...OLIGONUC nucleotide sequences [cloning vector] ...VECTOR nucleotide sequences [eukaryotic POL II promoter] ...EPD nucleotide sequences [HIV] ...HIVSSA nucleotide sequences [host gene] ...DCT nucleotide sequences [immunoglobulin] ...AANSPII nucleotide sequences [probes] ...HGIR nucleotide sequences [small RNA] ...CSRS nucleotide sequences [small subunit rRNA] ...SRSRSC nucleotide sequences [transcriptional element] ...SIGSCAN nucleotide sequences [transposable element ORF] ...DCT nucleotide sequences [tRNA gene] ...TRNAC nucleotide sequences [tRNA] ...TRNAC nucleotide sequences [variants] ...JIPIDV oligonucleotide sequences [features] ...OLIGONUC organisms [bacterial, synonyms] ...TRF organisms [bacterial] ...TRF organisms [C. elegans strains] ...CGC organisms [D. melanogaster, wild-type strains] ...DROSO organizers [conferences] ...BKS people [AI researchers] ...AIMB peptides [synthetic substrates] ...LYSIS phenotypes [D. melanogaster non-chromosomal] ...DROSO physical maps [data] ...HGIR plasmid prefixes ...PPR plasmid prefixes [locale of registrants] ...PPR plasmid prefixes [name of registrants] ...PPR polymorphic information ...GDB polymorphic markers [RLFPs] ...RFLPD probes ...GDB probes [mouse] ...MOUSE profiles [from company literature] ...BCAD profiles [from questionnaires] ...BCAD program names [software] ...GBSOFT protein [coding regions] ...JIPIDSN protein [crystal composition] ...PSS protein [crystallization conditions] ...BMCD protein [function] ...JIPIDB protein [optimal PH] ...JIPIDB protein [sources] ...JIPIDB proteinase inhibitors ...LYSIS proteinase sources ...LYSIS proteinase specificity ...LYSIS proteins [transcription factor, names] ...SIGSCAN, TFD protein [organization] ...JIPIDB publishers ...BKS restriction enzymes ...RED restriction fragments ...HGIR RFLPs ...DRHPL RFLPs [human] ...HGML secondary structure features [nucleotide sequence, small subunit rRNA] ...SRSRSC secondary structure features [protein] ...PSS secondary structures [nucleotide sequence, rRNA]...BRD secondary structures [tRNA] ...TRNAC sequence alignments ...AANSPII, HIVSSA, TRNAC sequence location ...TFD sequences ...BMR software [acquisition information] ...GBSOFT software [functions] ...GBSOFT software [system requirements] ...GBSOFT somatic cell hybrids [human & rodent] ...HGMCR sources ...JIPIDSN sources [carbohydrate sequence] ...CARBBANK sources [cloning vector] ...VECTOR sources [microorganism] ...MICIS sources [protein variant] ...JIPIDV sources [sequence] ...JIPIDS, SRSRSC sources [tRNA] ...TRNAC statistical analysis [cat gene frequency distribution] ...CATGENE stock number [Drosophila] ...IUDSC substances [chemical] ...CASORF taxonomic classification ...MICIS, TRF, DDBJ, EMBL, GENBANK, PTG toxicity [chemical] ...TOXNET toxin properties ...TOXNET transposons ...PRCTR tray number [Drosophila] ...IUDSC viruses [AIDS-related animal] ...HIVSSA