data obtained via anonymous ftp from ncbi.nlm.nih.gov ---------------- July 30, 1990 ------------------------------------------------------------------------------- I. These are the primary tables of the TFD database, release 1.0 (June 1990). The database is formatted as ASCII tables in the files contained in this directory. This format was chosen for distribution purposes since nearly all relational database management systems have some capability for the importing of ASCII text files. The data dictionary for this database is contained in the file "tfd.dct," and the actual data in the "*.dat" files. The following differences exist between the tables described as published and those provided here: (1) Sequence information in the cdnas and elements tables are entered as 5 X 200 basepair entries per record (rather that 4 X 250 or 4 X 240). The elements table contains 960 bp per record as it did previously. (2) The field names for sequence entries in the cases of the cdnas and the elements tables have been changed from sequence1, sequence2, etc. to na_seq1, na_seq2, etc. (3) The elements table contains 112 rather than 184 records, in this release. There were a number of duplicated records and prokaryotic promoters which have been removed from the data files provided here. For a true promoter database, the user may want to consider the Eukaryotic Promoter Database (EPD) that is maintained by Phil Bucher of Stanford University. (4) Entries in the ref_n fields of the tables have been supplanted with the US Natl Library of Medicine Unique Identifiers (UIs) for the corresponding publications. (5) Entries to the cdna field in the factors table contain a "Y" entry if either a genomic or a cDNA clone exists. "N" entries are not contained in this field. (6) This (1.0) release contains 25, 193, 282, and 1432 records for the cdnas, domains, factors, and sites tables, respectively. II. The data dictionary for this database is organized as follows: The organization of the five tables is presented in five different sections, with the name of each table indicated at the top of each section. There are four columns per individual table dictionary. Each row contains the necessary information for a particular field. The first column indicates the position of the first character of the field in the complete fixed-length record. The second column indicates the length of the record. The third column indicates the field type (almost always "c" for character). The fourth column indicates the name of the field). III. The program "dynamic" as described in the publication below may be obtained from the MBCRR at the Dana-Farber Cancer Institute. In this case please write to: Temple F. Smith Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115 IV. Some TFD- associated files are contained in the "gcgs" and "software" subdirectories. For UWGCG users, some GCG-compatible files derived from the SITES table are contained in the "gcgs" subdirectory. For dBASE users, some files useful in converting the database into dBASE format are located in the "software" directory. V. The appropriate reference for this database is: Ghosh, D. (1990) A Relational Database of Transcription Factors. Nucleic Acids Res 18: 1749-1756. ------------------------------------------------------------------------------- David Ghosh NCBI, NIH Bethesda, MD 20894 Internet address: ghosh@ncbi.nlm.nih.gov ------------------------------------------------------------------------------- This file is derived from the SEQ_NAME, NA_SEQ, and MAIN_REF fields of the SITES table of the TFD database. It can be used with the MAP, MAPSORT, MAPPLOT, and FIND programs in the GCG package. Users may want to consult Ghosh (90) NAR 18.7: 1749 for a background. Name - Sequence - Comments.. 28S_rRNA.2 0 AGGTCGACCAGWWNTCCG 0 ! Kermekchiev, M.B., Grummt, I. Nucl. Acids Res. 15: 4131-4143 (1987) 5S_RNA_IC1 0 WWGGGSSGRG 0 ! Rhodes, D., Klug, A. Cell 46: 123-132 (1986) 60-HBVenh 0 TTTACACAATGTGGTTATCC 0 ! Shaul, Y. and Ben-Levy, R. (1987) EMBO J. 6, 1913-1920 60k-protein_RS1 0 GAATTTAATTAA 0 ! 87287290 60k-protein_RS2 0 ATTAAATTTTAAATT 0 ! 87287290 A2vit_RE2 0 GTTTACACAACCT 0 ! Dobbeling et.al. (88) EMBO J 7.8: 2495 AA-CSEQ 0 TGANT 0 ! Hinnebusch, A.G., Fink, G.R. J. Biol. Chem. 258: 5238-5247 (1983) AAT_US2 0 GTGGTTTC 0 ! Shen, R.-F., et al. Nucl. Acids Res. 15: 8399-8415 (1987) AAVN.160.O 0 ATTCACGTCA 0 ! Leza & Hearing (88) J Virol 62.8: 3003 AAVN.210.D 0 GGTCACGTGA 0 ! Leza & Hearing (88) J Virol 62.8: 3003 AC1_rec 0 CAATTAAA 0 ! Cho et.al. (88) JCB s12D: o126 ADH2.2 0 TAAGTTGGAGAA 0 ! Eisen et.al. (88) MCB 8.10: 4552 ADH2_prom 0 TCTCCAACTTATAAGTTGGAGA 0 ! ADH_US2 0 CACCTCCC 0 ! Dennis, E.S., et al. Nucl. Acids Res. 13: 727-743 (1985) AD_MLP 0 GGCCACGTGACC 0 ! Carthew et.al. (87) Genes Dev 1: 973 AP1-Col.2 0 TGAGTCAG 0 ! Angel et.al. (87) Cell 49: 729 AP1-E3.2 0 AGATGACT 0 ! Garcia, J., et al. Nucl. Acids Res. 15: 8367-8385 (1987) AP1-MT-II 0 TGACTTCT 0 ! 87301729 AP1-SV40.1 0 TTAGTCAG 0 ! 87159552 AP1-SV40.2 0 TGACTAA 0 ! 87115798 AP1-SV40.3 0 TTAGTCAG 0 ! 87159552 AP1-hmtIIa 0 TGACTCAG 0 ! Angel et.al. (87) Cell 49: 729 AP1-polyom 0 TTAGTCAC 0 ! Angel et.al. (87) Cell 49: 729 AP1_CS 0 TGAGTCAG 0 ! Angel et.al. (87) Cell 49: 729 AP2-BPV.1 0 CTCCCCAAGGAC 0 ! Imagawa et.al. (87) Cell 51: 251 AP2-BPV.3 0 TTGGGGCTCCCCAA 0 ! Imagawa, M. et al (1987) Cell 51, 251-260 AP2-GH.2 0 GACAAGCCAGGGGGCATGATCCC 0 ! Imagawa, M. et al (1987) Cell 51, 251-260 AP2-H2Kb1 0 ATCCCCAGCCCT 0 ! Imagawa et.al. (87) Cell 51: 251 AP2-H2Kb3 0 TTCCCCATCT 0 ! Imagawa et.al. (87) Cell 51: 251 AP2-Hcmyc1 0 CCGCCCACCGGCC 0 ! Imagawa et.al. (87) Cell 51: 251 AP2-HgH1 0 TGCCCTCTGGCC 0 ! Imagawa et.al. (87) Cell 51: 251 AP2-Hmt2a2 0 TTCGCCTGGAGC 0 ! Imagawa et.al. (87) Cell 51: 251 AP2-MT-II.1 0 GCCGAGGCGTCCCCGAGGCGCAAGTGG 0 ! 87301729 AP2-MT-II.2 0 AGGGAACTGACCGCCCGCGGCCCGTGTG 0 ! 88027009 AP2-MT-II.3 0 CCGGGTGTTTCGCCTGGAGCCGCAAGTG 0 ! 88027009 AP2-SV40.0 0 GTCCCCAGGCTC 0 ! Imagawa et.al. (87) Cell 51: 251 AP2-SV40.1 0 CTGGGGAGCCTGGGGA 0 ! 87301729 AP2-SV40.2 0 GAGCCTGGGGACTTT 0 ! 88027009 AP2-SV40.3 0 GGAGCCTGGGGACTTT 0 ! 88014240 AP2-c-myc.1 0 AAAGGGCCGGTGGGCGGGAGATT 0 ! 88027009 AP2-c-myc.2 0 CAGCACAGCTCGGGGGTCCTCAG 0 ! 88027009 AP2_CS1 0 TCCCCANGCC 0 ! Imagawa et.al. (87) Cell 51: 251 AP2_CS3 0 CCSCRGGC 0 ! Mitchell et.al. (87) Cell 50: 847 AP2_CS4 0 YCSCCMNSSS 0 ! Imagawa et.al. (87) Cell 51: 251 AP3-SV40.1 0 ACTTTCCACACC 0 ! 87301729 AP3-SV40.2 0 TTTCCACACCCTAACTG 0 ! 87014825 AP3.1 0 GGTGGWWWGT 0 ! Chiu et.al. (87) Nature 329: 648 AP3.2 0 GGGTGTGGAAAG 0 ! AP5_site 0 CTGTGGAATG 0 ! Kovesdi et.al. (87) Nature 326: 87 APF-AFP1 0 AGGTTACTAGTTAACAG 0 ! Cereghini et.al. (88) Genes Dev 2.8: 975 APF-AFP3 0 AGGTTACTAGTTAACAG 0 ! Cereghini et.al. (88) Genes Dev 2.8: 975 APF-FIB1 0 TAGTTAATATTTGACAG 0 ! Cereghini et.al. (88) Genes Dev 2.8: 975 APF-PK 0 TGGTTATACTTTAACCA 0 ! Cereghini et.al. (88) Genes Dev 2.8: 975 APF-alb1 0 TGGTTAATGATCTACAG 0 ! Cereghini et.al. (88) Genes Dev 2.8: 975 APF-alb3 0 TAGTTAATAATCTACAA 0 ! Cereghini et.al. (88) Genes Dev 2.8: 975 APF-alb5 0 AGGTTAATAATTTTCCA 0 ! Cereghini et.al. (88) Genes Dev 2.8: 975 APF_CS 0 RGTTAMTNNTYNNCM 0 ! Cereghini et.al. (88) Genes Dev 2.8: 975 APRT-C 0 GCCCCACC 0 ! Park & Taylor (88) MCB 8.6: 2537 APRT-H 0 GCCCCACC 0 ! Park & Taylor (88) MCB 8.6: 2537 ARCH-US1 0 TTTAWA 0 ! Reiter, W.-D., et al. Nucl. Acids Res. 16: 1-19 (1988) ARE.1 0 ATGACTCAT 0 ! ARE.2 0 TKAGTCA 0 ! Lee et.al. (87) Cell 79: 741 ARS_CS 0 WTTTATRTTTW 0 ! AT-Alu 0 AGCTGGGATTACAGRC 0 ! Roizman et.al. (84) AT-LC 0 GAAGTTTTAT 0 ! Roizman et.al. (84) AT-MSV 0 GAACTGCTTACCACAG 0 ! Roizman et.al. (84) AT-tk 0 GCTTGTCATTACCACCG 0 ! Roizman et.al. (84) AT-|INF 0 AAATCTTTTTCCCTATT 0 ! Roizman et.al. (84) AT/|0.2 0 GAACCCCATTAGCATGC 0 ! Roizman et.al. (84) AT/|27.1 0 GTAATTAATTAGCATAT 0 ! Roizman et.al. (84) AT/|4.1 0 GCATCTCATTACCGCCC 0 ! Roizman et.al. (84) AT/|47.1 0 GTTCCTCGTTAGCATGC 0 ! GTTCCTCGTTAGCATGC AT/|47.3 0 CACTCCTTTTACCCGGC 0 ! Roizman et.al. (84) ATF_CS 0 GTGACGTMR 0 ! ATF_RS 0 TGACGT 0 ! Lin, Y.-S., Green, M.R. Proc. Nat. Acad. Sci. USA 85: 3396-3400 (1988 AbdB-r_RS1 0 TAATTTGCAT 0 ! Biggin & Tjian (89) TGIS in press Ad2MLP_US.2 0 GGCCACGTGACC 0 ! Sawadogo, M. and Roeder, R.G. (1985) Cell 43, 165-175 Ad2MLP_US.4 0 TATAAAA 0 ! Sawadogo, M. and Roeder, R.G. (1985) Cell 43, 165-175 Ad5I/EIA 0 AGAAGTGAAA 0 ! Hearing & Shenk (85) Euk Trans: (abs) AdE2 0 ACCGNNNNCGGT 0 ! Androply et.al. (87) Nature 325: 70 Ad_DPS.2 0 AAAAGAACATCTTTT 0 ! Cohen et.al. (88) JBC 263.21: 10377 Adf-1-AntpP1 0 CNGTCGNCGTCGNCG 0 ! Biggin & Tjian (89) in press Adh1_US1 0 CCACG 0 ! Ferl and Nick (87) JBC 262: 7947 Adh1_US3 0 CGTGG 0 ! Ferl and Nick (87) JBC 262: 7947 Adh2_US 0 TCTCCAACTTATAAGTTGGAGA 0 ! Beier, D.R., et.al. (1985) MCB 5: 1743 Adh_US1 0 GCTGCTGCTGCATCCGTCGACGTCG 0 ! Heberlein, U. et al. (1985) Cell 41, 965-977 Adh_US3 0 GCAGCGCTGCCGTCGCCGGCTGAGCAGC 0 ! Heberlein, U. et al. (1985) Cell 41, 965-977 Alb_DEII 0 TTTTTGGCAAGGAT 0 ! Alb_DEIII 0 GCAAGGGATTTAGTT 0 ! Alb_PEI 0 TGGTTAATGGATCTACAGT 0 ! Albumin_US3 0 TGGTTAATGATCTACAGTTATTGGTTA 0 ! Cereghini, S. et al. (1987) Cell 50, 627-638 Amy_prom 0 TGTTCT 0 ! Antp-Ubx 0 TAATAATAATAATAA 0 ! Biggin & Tjian (89) TIGS in press Ap1-Col 0 ATGAGTCAG 0 ! Ap1-E3 0 GTTAGTCAT 0 ! Ap1-SV 0 ATTAGTCAG 0 ! ApoCIII- 0 GAGTTGGGAAATCCCT 0 ! ApoCIIId 0 CCCCACTGAGGAACC 0 ! ApoCIIIp1 0 CTCAGGCCCT 0 ! ApoCIIIp2 0 GGTGACCTT 0 ! ApoE_A 0 CTCCCYCTGYCC 0 ! Smith et.al. (88) JBC 263.17: 8300 ApoE_B1 0 SCCCACCTC 0 ! Smith et.al. (88) JBC 263.17: 8300 B-factor-h 0 TATAAATA 0 ! Parker, C.S. and Topol, J. (1984) Cell 37, 273-283 B1-A/B 0 AAAWWGGAAWYG 0 ! Galson & Housman (88) JCB s12D: o571 (abs) BAR1.1 0 ATGTAATT 0 ! Ko et.al. (88) Cell 55: 135 BOXA-SEQ 0 TGCAAAT 0 ! Wich, G., et al. Nucl. Acids Res 14: 2459-2479 (1986) Bfactor-MH 0 TGGGGATTCCCCA 0 ! 87172719 CAAT.1 0 AACCAAT 0 ! Chodosh et.al. (88) Cell 53: 11 CAAT.3 0 AGCCAAT 0 ! Chodosh et.al. (88) Cell 53: 11 CAAT.5 0 YAGYNNNRRCCAATCNNNR 0 ! Chodosh et.al. (88) Cell 53: 11 CAAT.6 0 NTTGGCNNNNNGCCAN 0 ! Chodosh et.al. (88) Cell 53: 11 CACA 0 CACACACACA 0 ! CAP.2 0 TGCATCA 0 ! Snyder, M., et al. Cell 29: 1027-1042 (1982) CAP1 0 AATGTGATCA 0 ! DeCrombrugghe, B., et al. Science 224: 831-838 (1984) CAP3 0 TAAAAAGTGTGACCTAGATCACATTTTTGG 0 ! Bigham, N. DNA Palindromeness of CAP Binding Sites, San Francisco Sta CAP4 0 YRRRYYYRYR 0 ! Bigham, N. DNA Palindromeness of CAP Binding Sites, San Francisco Sta CAPsite 0 CANYYY 0 ! Buchner & Trifonov (86) NAR 14.24: 10009 CAR_US1 0 TAGCCGCCGA 0 ! Sumrada, R.A., Cooper, T.G. Proc. Natl. Acad. Sci. USA 82: 643-647 (1 CArG-csact 0 CCAAATATGG 0 ! Gustafson et.al. (88) MCB 8.10: 4110 CArG-fos 0 CCATATTAGG 0 ! Gustafson et.al. (88) MCB 8.10: 4110 CArG-hb1 0 CCTTTTATGG 0 ! Muscat et.al. (88) CArG-hs1 0 CCCAAATATGGCTC 0 ! Muscat et.al. (88) MCB 8.10: 4120 CArG-hs3 0 CCATATACGG 0 ! Muscat et.al. (88) MCB 8.10: 4120 CArG-sc1 0 GCCCATATTTGGC 0 ! Muscat et.al. (88) MCB 8.10: 4120 CArG_CS 0 CCAWATWWGG 0 ! Gustafson et.al. (88) MCB 8.10: 4110 CBFaA-glob 0 CCAAT 0 ! Cohen, R.B. et al. (1986) 6, 821-832 CBP-MSV 0 CCAAT 0 ! 86133549 CBP-tk 0 CCAAT 0 ! 86133549 CCAAT-bf-h 0 CCAAT 0 ! Kingston, R.E. et al. (1987) Mol. Cell. Biol. 7, 1530-1534 CDEI 0 ATCACGTG 0 ! Hegemann et.al. (88) MCB 8.6: 2522 CDF-H2B1 0 ATTGG 0 ! Barberis, A. et al. (1987) Cell 50, 347-359 CEN6 0 AGTTTTTGCTTTCCGAAGATGTAAA 0 ! Hegemann et.al. (88) MCB 8.6: 2522 COUP-oval 0 TGACCTTTGACAC 0 ! Wijnholds et.al. (88) EMBO J 7.9: 2757 COUP-ovalb 0 GTCAAAGGTCAAA 0 ! CRE-Ga 0 TGACGTCA 0 ! Janesi et.al. (88) JBC 263.20: 9879 CRE-PE 0 TGCGTCA 0 ! Hymal et.al. (88) MCB 8.10: 4225 CRE-som 0 TGACGTCA 0 ! Hymal et.al. (88) MCB 8.10: 4225 CRE-somat 0 TGACGTC 0 ! 87258235 CREB-ACG 0 ACGTCA 0 ! Sassone-Corsi (88) PNAS 85: 7192 CREB-CMV 0 ACGTCA 0 ! Sassone-Corsi (88) PNAS 85: 7192 CREB-E3 0 TCGTCA 0 ! Sassone-Corsi (88) PNAS 85: 7192 CREB-Fib 0 ACGTCA 0 ! Sassone-Corsi (88) PNAS 85: 7192 CREB-HTLV 0 ACGTCA 0 ! Sassone-Corsi (88) PNAS 85: 7192 CREB-VIP 0 ACGTCA 0 ! Sassone-Corsi (88) PNAS 85: 7192 CREB-fos 0 ACGTCA 0 ! Sassone-Corsi (88) PNAS 85: 7192 CREB-hsp70 0 TCGTCA 0 ! Sassone-Corsi (88) PNAS 85: 7192 CREB_CS 0 ACGTCA 0 ! Sassone-Corsi (88) PNAS 85: 7192 CRFEII-lat 0 ATTGG 0 ! Goding, C.R. et al. (1987) NAR 15, 7761-7780 CTF/CBP-hs 0 GATTGG 0 ! Morgan, W.D. et al. (1987) Mol. Cell. Biol. 7, 1129-1138 CTF/NF-I-t 0 AGCCAAT 0 ! 87078403 CYC7_US1 0 GCTAATAGCGATAATAGCGAGGG 0 ! Pfeifer, K. et al. (1987) Cell 49, 19-27 CuE1.4 0 GTCAAGATGGC 0 ! Murre et.al. (89) Cell 56: 777 CuE2.1 0 CAGCTGGC 0 ! Ephrussi et.al. (85) Science 227: 134 CuE2.2 0 GCTGGCAGGAAGCAGGT 0 ! Schlokat et.al. (86) EMBO J 5: 1791 CuE2.3 0 AGCAGCTGGC 0 ! Lenardo et.al. (87) Science 236: 1573 CuE3.2 0 GTCATGTGGCAAG 0 ! Sen and Baltimore (86) Cell 46: 705 CuE3.4 0 GTCATGTGG 0 ! Murre et.al. (89) Cell 56: 777 CuE3.4 0 GTCATGTGGC 0 ! Lenardo et.al. (87) Science 236: 1573 CuE4.1 0 CAGGTGGT 0 ! Ephrussi et.al. (85) Science 227: 134 CytR_RS2 0 TKYRANNNNNWTCRMR 0 ! Valentin-Hansen, P., et al. Nucl. Acids Res. 14: 2215-2228 (1986) DBF-1-Ubx 0 CNAACTGGTCCTGCGG 0 ! Biggin & Tjian (89) TIGS DHFR.1 0 ATCRAAWTAGRAAKAGCAAT 0 ! Frayne, E.G., Kellems, R.E. Nucl. Acids Res. 14: 4113-4126 (1986) DQ-beta-US1 0 ATTTGTAT 0 ! Miwa & Strominger (87) NAR 15: 8057-67 DRE.cvitII 0 AGAACATGATGTTCT 0 ! Aukenbauer et.al. (88) PNAS 85: 7526 DTF-1_RS2 0 GCAACACC 0 ! Biggin & Tjian (89) TIGS in press E1A_RS2 0 GTAGTY 0 ! Weeks, D.L., Jones, N.C. Mol. Cell. Biol. 3: 1222-1234 (1983) E1A_element_II 0 SGCGWAA 0 ! Hearing, P., Shenk, T. Cell 45: 229-236 (1986) E1a.1 0 GATGTGGTAAA 0 ! Barrett, P. et.al. (1987) NAR 15: 2719-2735 E2-RS 0 ACCNNNNNNGGT 0 ! E2A_prom 0 TGGGAATT 0 ! Jones et.al. (88) Genes Dev 2: 267 E2E1a 0 CAATTTTCGCGCGG 0 ! Kovesdi, I. et al. (1987) PNAS USA 84, 2180-2184 E2F-Ad12-E1a 0 GCGCGAAAA 0 ! Thalmeier et.al. (89) Genes Dev 3: 527 E2F-Ad5-E1a.1 0 GCGCGAAAA 0 ! Thalmeier et.al. (89) Genes Dev 3: 527 E2F-EIIaE1 0 GAAAGGGCGCGAAACTA 0 ! Yee, A.S. et al. (1987) EMBO J. 6, 2061-2068 E2F-EIIaE1 0 TAGTTTTCGCGCTTAAATT 0 ! Siva Raman, L. and Thimmappaya, B. (1987) PNAS USA 84, 6112-6116 E2F-myc 0 GCGGGAAAA 0 ! Thalmeier et.al. (89) Genes Dev 3: 427 E2_RS.1 0 GAACCACACCCGGTAC 0 ! Li et.al. (89) Genes Dev 3: 510 E2_RS.11 0 TCACCGAAACCGGTAA 0 ! Li et.al. (89) Genes Dev 3: 510 E2_RS.13 0 CAAACGATAAAGGTAG 0 ! Li et.al. (89) Genes Dev 3: 510 E2_RS.15 0 CCACCCCTCCTGGTAA 0 ! Li et.al. (89) Genes Dev 3: 510 E2_RS.17 0 GCACCATGGCCGGTGC 0 ! Li et.al. (89) Genes Dev 3: 510 E2_RS.3 0 CGACCTATCCCGGTAA 0 ! Li et.al. (89) Genes Dev 3: 510 E2_RS.5 0 GAACCAGAACTGGTAA 0 ! Li et.al. (89) Genes Dev 3: 510 E2_RS.7 0 GTACCGCCATCGGTGC 0 ! Li et.al. (89) Genes Dev 3: 510 E2_RS.9 0 GTACCGTTGCCGGTCG 0 ! Li et.al. (89) Genes Dev 3: 510 E2_RS1 0 ACCNNNNNNGGT 0 ! Harrison, S.M., et al. Nucl. Acids Res. 15: 10267-10284 (1987) E3III_RS 0 GAAGTTCAGATGACTAACTCA 0 ! Kornuc et.al. (88) MCB 8.9: 3717 E3I_RS 0 GGGTATAACTCACCTGA 0 ! Kornuc et.al. (88) MCB 8.9: 3717 E4-160R.O 0 CGTTACGTCA 0 ! Leza & Hearing (88) J Virol 62.8: 3003 E4F1-E1A.1 0 GCGTAAC 0 ! Lee and Green (87) EMBO J 6: 1345 E4F1-E1a.3 0 ACGTCAG 0 ! Lee and Green (87) EMBO J 6: 1345 E4F1-E3 0 TCGTCAC 0 ! Lee and Green (87) EMBO J 6: 1345 E4F1-E4 0 ACGTAACGT 0 ! Lee, K.A.W. and Green, M.R. (1987) EMBO J. 6, 1345-1353 E4F1-E4.2 0 TCGTCAC 0 ! Lee and Green (87) EMBO J 6: 1345 E4F1-E4.4 0 ACGTCAC 0 ! Lee and Green (87) EMBO J 6: 1345 EARLY-SEQ1 0 YYCCGCCC 0 ! Fromm, M., Berg, P. J. Mol. Appl. Gen. 1: 457-481 (1982) EBP20-ADEI2 0 TCATACCA 0 ! Costa et.al. (88) PNAS 85: 3840 EBP20-ATsC1 0 TAAGACTC 0 ! Costa et.al. (88) PNAS 85: 3840 EBP20-MSV 0 ACAGGATATCTGTGGTAAGCAGTT 0 ! 88056262 EBP20-MSV 0 AGGATATCTGTGGTAAGCA 0 ! Johnson et.al. (87) Genes Dev 1: 133 EBP20-SV40 0 GGGACTTTCCACACCCTAAC 0 ! 87014825 EBP20-SVC 0 TTCCACAC 0 ! Costa et.al. (88) PNAS 85: 3840 EBP20-TTRS3 0 TCTTACTC 0 ! Costa et.al. (88) PNAS 85: 3840 EBP20-poly 0 AGTGTGGTTTTGCAAGAGGAAGC 0 ! 88056262 EBP20_CS2 0 TGTGGWWWGCCAAT 0 ! EBP20_CS3 0 TCNTACTC 0 ! Costa et.al. (88) PNAS 85: 3840 EF-C-polyo 0 AGTTGCTAGGCAACT 0 ! 87041493 EF-C_RS 0 GTTGCTAGGCAAC 0 ! Martin et.al. (88) PNAS 85: 5839 EFI-RSV 0 AAGCACCGTGCATGCCGATTGGTGGAAGTA 0 ! 87144250 EFII-RSV 0 TATGCA 0 ! 87144250 EGFR_prom 0 CCCAGACCGGACGACAG 0 ! EIIF_RS 0 GACGTAGTTTTCGCG 0 ! EIIaE-B 0 GTGGCCGCTGGAGATGACGTA 0 ! Boeuf, H. et.al. (1987) Nucleic Acids Research 15: 509-527 EIIaE-BEII 0 TGGAGATGACGTAGT 0 ! Boeuf et.al. (1987) NAR 15: 509 EIIaE-CaEI 0 GTGGGATTTCCTT 0 ! Boeuf et.al. (87) NAR 15: 2719 EIIaE-T1 0 AGTCCTTAAGAGTCAG 0 ! Boeuf, H. et.al. (1987) Nucleic Acids Research 15: 509-527 EIIaE-T2 0 CTTAAATTTG 0 ! Boeuf, H. et.al. (1987) Nucleic Acids Research 15: 509-527 EIIaE1_US 0 CCTTAAGAGT 0 ! Boeuf et.al. (87) NAR 15: 509 EIIaE_prom 0 ACGTMAC 0 ! EIIaE_prom.2 0 AGATGACGTA 0 ! ER 0 GCGTGACCGGAGCTGAAAGAACAC 0 ! 84119500 ERE 0 AGGTCANNNTGACCT 0 ! Beato (89) Cell 56: 335 ERE 0 GGTCANNNTGACC 0 ! Wijnholds et.al. (88) JCB s12D: o804 (abs) ERE.cvitII 0 GGTCAGCGTGACC 0 ! Ankenbauer et.al. (88) PNAS 85: 7526 ETFA.2 0 YYACGTCA 0 ! Leza & Hearing (88) J Virol 62.8: 3003 ETF_RS1 0 CAGCCCCCGGCGCAG 0 ! Kageyama et.al. (88) PNAS 85.14: 5016 Ea_boxA 0 CCTAGCAACAGATG 0 ! Ea_boxB 0 YNNTKCTGATTGGYT 0 ! Ea_boxH 0 GGACCTG 0 ! Eiv_prom 0 GTKACGW 0 ! FSE2 0 TGACTCA 0 ! Rauscher, F.J., et al. Cell 52: 471-480 (1988) FSE2.2 0 ACTCAGAGGAAAA 0 ! G-box 0 SGGGTGKGTT 0 ! G-string 0 GGGCGG 0 ! GAGA-en 0 AGAGAGAG 0 ! Biggin & Tjian (89) TIGS in press GAGA_RS 0 MGAGAGAGC 0 ! Biggin & Tjian (88) Cell 53.5: 699 GAL10_US2 0 GAGCGGGTGACAGCCCTCCGAAG 0 ! Bram et.al. (86) EMBO J 5: 603 GAL1_US1 0 CCTCGCGCCGCACTGCTCCGAAC 0 ! Bram et.al. (86) EMBO J 5: 603 GAL2_US1 0 TATCGGGGCGGATCACTCCGAAC 0 ! Bram et.al. EMBO J 5: 603 GAL4-GAL1-1.2 0 CGGGTGACAGCCCTCCGA 0 ! Bram, R.J. et al. (1986) EMBO J. 5, 603-608 GAL4-GAL1-1.4 0 CGCGCCGCACTGCTCCGAACAAT 0 ! Bram, R.J. et al. (1986) EMBO J. 5, 603-608 GAL4-GAL1-1.6 0 TTATC 0 ! Selleck, S.B. and Majors, J. (1987) Nature 325, 173-177 GAL4-GAL2.1 0 TATCGGGGCGGATCACTCCGAAC 0 ! Bram, R.J. et al. (1986) EMBO J. 5, 603-608 GAL4-GAL2.2 0 CACCGGCGGTCTTTCGTCCGTGC 0 ! Bram, R.J. et al. (1986) EMBO J. 5, 603-608 GAL4-GAL7.3 0 CAACTGTTGACCGTGATCCGAAG 0 ! Bram, R.J. et al. (1986) EMBO J. 5, 603-608 GAL4-GAL7.4 0 GGCTCAACAGTGCTCCGAAGTAT 0 ! Bram, R.J. and Kornberg, R.D. (1985) PNAS USA 82, 43-47 GAL4-GAL80 0 CGGCGCACTCTCGCCCG 0 ! Bram, R.J. et al. (1986) EMBO J. 5, 603-608 GAL4-MEL1 0 TTCGGCCATATGTCTTCCGAA 0 ! 86220139 GAL4-depGA 0 TTATATATC 0 ! Selleck, S.B. and Majors, J. (1987) Nature 325, 173-177 GAL4-depGAL 0 ACTTATAT 0 ! Bram, R.J. et al. (1986) EMBO J. 5, 603-608 GAL4_CS1 0 SWWCGGRSSACWSTCSTCCGAAC 0 ! Bram et.al. (86) EMBO J 5: 603 GAL4_RS1 0 CGGASGACWGTCSTCCG 0 ! Giniger, E., et al. Cell 40: 767-774 (1985) GAL7_US2 0 GCTCGGACAACTGTTGACCGTGA 0 ! Bram et.al. (86) EMBO J 5: 603 GALV_E 0 AGAAATAGATGAGTCAACAG 0 ! GC2-GH-CS 0 GAGCTTCTAAATTATCCATCAGCACAAGC 0 ! West et.al. (87) MCB 7: 1193 GCAEF-1a/T 0 AACACCCA 0 ! Huet, J. et al. (1985) EMBO J. 4, 3539-3547 GCN4-HIS 0 TGACTC 0 ! Arndt, K. and Fink G.R. (1986) PNAS USA 83, 8516-8520 GCN4-HIS3.1 0 TGACGA 0 ! Arndt, K. and Fink G.R. (1986) PNAS USA 83, 8516-8520 GCN4-HIS3.3 0 TAGTCAGGGAAGTCA 0 ! Arndt, K. and Fink G.R. (1986) PNAS USA 83, 8516-8520 GCN4-HIS4.1 0 TGACTC 0 ! Arndt, K. and Fink G.R. (1986) PNAS USA 83, 8516-8520 GCN4-HIS4.2 0 TGACTC 0 ! Arndt, K. and Fink G.R. (1986) PNAS USA 83, 8516-8520 GCN4-HIS4.4 0 TGACTA 0 ! Arndt, K. and Fink G.R. (1986) PNAS USA 83, 8516-8520 GCN4-ILV1.2 0 TGAGTG 0 ! Arndt, K. and Fink G.R. (1986) PNAS USA 83, 8516-8520 GCN4-ILV2 0 TGATTC 0 ! Arndt, K. and Fink G.R. (1986) PNAS USA 83, 8516-8520 GCRE 0 TGACTC 0 ! Hope & Struhl (85) Cell 43: 177 GH-CSE 0 TAAATTA 0 ! Ye et.al. (88) JBC 263: 7821 GH-TRE 0 AAAGGCGG 0 ! Ye et.al. (88) JBC 263: 7821 GH.1 0 AGGGCACCCACGTGACC 0 ! Lefevre, C. et al. (1987) EMBO J. 6, 971-981 GH0 0 ACCGACCG 0 ! GH1 0 TCTGTCTG 0 ! GHF-1aGH 0 NNNTAAATNNN 0 ! Lefevre, C. et al. (1987) EMBO J. 6, 971-981 GHN 0 CTCGAGTACGAWCYGWYCGTCGGTAGGGAAG 0 ! GR-ARV-2.1 0 AATGAAGGAGAGAACAACAGCTTGTT 0 ! Miksicek et.al. (86) Cell 46: 283 GR-CLYS-II 0 AATTCCTCTGTGGCT 0 ! Beato et.al. (87) J Steroid Biochem GR-COV-I 0 TTTTCTGCCTGTTCT 0 ! Beato et.al. (87) J Steroid Biochem 27: 9 GR-CVIT-II 0 GGATCAATGTGTTCT 0 ! Beato et.al. (87) J Steroid Biochem 27: 9 GR-DSC7 0 GATTTGATCTGTTCT 0 ! Beato et.al. (87) J Steroid Biochem 27: 9 GR-G/A-FLV.1 0 ATGTCTGTCCAGGACAGCCAACCGGA 0 ! Miksicek et.al. (86) Cell 46: 283 GR-G/A-FLV.3 0 CTTGAGGCCAAGAACAGTTAAACCCC 0 ! Miksicek et.al. (86) Cell 46: 283 GR-HMT-IIaI 0 GGTACACTGTGTCCT 0 ! Beato et.al. (87) J Steroid Biochem 27: 9 GR-HuEnRV4-1.2 0 ATCAGCTAACAGAACAAAAAGTTTTA 0 ! Miksicek et.al. (86) Cell 43: 283 GR-MMTV. 0 AGATCAGTAGATCAG 0 ! 84082063 GR-MMTV.01 0 CCAAGGAGGGGACAGTGG 0 ! 84082063 GR-MMTV.02 0 ACTAATAGAACATTA 0 ! 84082063 GR-MMTV.03 0 TTTTTGGTTACAAACTGTTCTTAA 0 ! 84221898 GR-MMTV.04 0 GATGTGAGACAAGTGGTTTCCTGAC 0 ! 84082063 GR-MMTV.10 0 CCTCGTTTTAAGAACAGTTTGTAACC 0 ! Miksicek et.al. (86) Cell 46: 283 GR-MMTV.12 0 ATAGGAAAATAGAACACTAAGAGCTC 0 ! Miksicek et.al. (86) Cell 46: 283 GR-MSV-II 0 TGTTCCATCTGTTCT 0 ! Beato et.al. (87) J Cell Biochem 27: 9 GR-MT-IIA 0 TGTCCT 0 ! 84168159 GR-MoMSV.1 0 ATCAAGGTCAGGAACAGAGAGACAGC 0 ! Miksicek et.al. (86) Cell 46: 283 GR-MoMSV.3 0 CTCAGGGCCAAGAACAGATGGTCCC 0 ! Miksicek et.al. (86) Cell 46: 283 GR-MuEnRV14-1.2 0 GGGGGCTAGCAGAACAGAACAGAAAG 0 ! Miksicek et.al. (86) Cell 46: 283 GR-MuRFV.2 0 CAGAAAAACAAGAACAAGGAAGTACA 0 ! Miksicek et.al. (86) Cell 46: 283 GR-RUG-II 0 CGGACACGGAGTCCT 0 ! Beato et.al. (87) J Steroid Biochem 27: 9 GR-RUG-III 0 TGTCAGTCTTGTTCT 0 ! Beato et.al. (87) J Steroid Biochem 27: 9 GR-lysozym.1 0 ATTCCTCTGT 0 ! 86206046 GR-lysozym.2-1 0 ACAGACTATAAAATTCCTCTGTGGCTT 0 ! 85137874 GR-lysozym.2-2 0 GTTTTTGACAACTGTAGAACAGAGGAA 0 ! 85137874 GR-lysozym.3 0 AACAGAGGAAT 0 ! 86206046 GR-rTAT-II 0 GGACTTGTTTGTTCT 0 ! Beato et.al. (87) J Steroid Biochem 27: 9 GR-rTO-II 0 CTTTCATGATGTCCT 0 ! Beato et.al. (87) J Steroid Biochem 27: 9 GR-uterogl 0 TGTTCT 0 ! 87231032 GR-visna.2 0 ACACAACTGGAGGACAATGCCCTATA 0 ! Miksicek et.al. (86) Cell 46: 283 GR-visna.4 0 GTCAGGACAGAGAACAATGCCTACCT 0 ! Miksicek et.al. (86) Cell 46: 283 GR/PR-MMTV.1 0 TGTTCT 0 ! 83297683 GR/PR-MMTV.2 0 TGTTCT 0 ! 85137874 GR/PR-MMTV.3 0 TGTTCT 0 ! 85137874 GR/PR-MMTV.4 0 TGTTCT 0 ! 85137874 GR/PR-MMTV.5 0 TGTTCT 0 ! 85137874 GR/PR-uter 0 TGTTCACT 0 ! 87102864 GR?-Mo-MuL 0 AGAACAGATG 0 ! 87172777 GRE.1 0 AGAACAGATG 0 ! GRE_CS1 0 GGTACANNNTGTYCT 0 ! Beato et.al. (87) J Steroid Biochem 27: 9 GRE_CS2 0 ACANNNTGTTCT 0 ! GRF1_RS 0 ATAACGTTTTTTGGGTAGTTGGAAC 0 ! Kimmerly et.al. (88) EMBO J 7.7: 2241 GRGH 0 GGCACAATGTGTCCT 0 ! Moore, D.D. et al. (1985) PNAS USA 82, 699-702 GR_CS 0 AGAWCAGW 0 ! Okret, S. et al. (1986) PNAS USA 83, 5899-5903 GT-I-rbcS-.1 0 GATTTACACT 0 ! 88054949 GT-I-rbcS-.2 0 GTGAGGTAATAT 0 ! 88054949 GT-I-rbcS-.3 0 GTGTGGTTAATAT 0 ! 88054949 GT-IIA-SV40 0 AGCTGGTTCTTTCC 0 ! 88082672 GT-IIBa-SV 0 ACAGCTG 0 ! 88082672 GT-IIBb-SV 0 ACAGCTG 0 ! 88082672 GT-IIC-SV4 0 ACATTCCACAG 0 ! 87014825 GT-IIc-Py-EC9.1 0 CAGGCCTGGAATGT 0 ! 88082672 GT-IIc-Py-wt 0 CAGGCCTAGAATGT 0 ! 88082672 GTI 0 GGTGTGGAAGT 0 ! GTII 0 GCTGTGGAATGT 0 ! Ga/CRFEII 0 GGGGGGATTGGG 0 ! Goding, C.R. et al. (1987) NAR 15, 7761-7780 H/Bsite 0 CACCC 0 ! Plumb, M.A., et al. Nucl. Acids Res. 14: 7675-7693 (1986) H2 0 ACCGACTG 0 ! H2KBI 0 TGGGGATTCCCCA 0 ! Baldwin & Sharp (87) MCB 7: 310 H4TF-1hist 0 GATTTC 0 ! Dailey, L. et al. (1986) PNAS USA 83, 7241-7245 HAP-hsp70 0 CTGCGAATGTTCGCG 0 ! Wu, C. (1984) Nature 309, 229-234 HAP1 0 AACCTCCGTTATCTCCATT 0 ! Winkler et.al. (88) EMBO J 7.6: 1799 HBVenh.1 0 GGGTTATGTCATTGGATGTT 0 ! Shaul, Y. and Ben-Levy, R. (1987) EMBO J. 6, 1913-1920 HBsAG-US 0 ACTGGCCAGCAGC 0 ! 87004566 HCMV2 0 CCCCATTGACGTCAATGGG 0 ! Boshart et.al. (85) Cell 41: 521 HDII_rec 0 TCAATTAAATGR 0 ! HEAVY-STR-SEQ 0 CANACCCCAAAGAYA 0 ! Chang, D.D., Clayton, D.A. Cell 36: 635-643 (1984) HGRE.2 0 TGTTCT 0 ! Cat, A.C.B., et al. EMBO J. 3: 2771-2778 (1984) HGRE.4 0 ATTCCTCTGT 0 ! Renkawitz, R., et al. Cell 37: 503-510 (1984) HGRE.6 0 ATTCCTCTGT 0 ! Van Der Ahe, D., et al. Nature 313: 706-709 (1985) HIG1_prom 0 TATTTTAGGAAGCAAA 0 ! Araki et.al. (88) Cell 53.5: 723 HIS-TRANS.1 0 TGCACCWWWWTGGTGCA 0 ! Ames, G. F.-L., Nikaido, K. EMBO J. 4: 539-547 (1985) HIS-wt 0 AAGAGTCAT 0 ! HIS168 0 AAGCGTCAT 0 ! HIV_enh 0 GGGACTTTCC 0 ! HLAII.Xbox 0 ACCCTTCCCCTAGCAACAGAT 0 ! Stimac et.al. (88) MCB 8.9: 3734 HMGCoAred_FP1 0 CTTGCTGGCGCCCCTCACGGCTCAG 0 ! Osborne, T.F. et al. (1987) PNAS USA 84, 3614-3618 HMGCoAred_FP6 0 GACGATCCTTTCTTATTGGCGGCCCTGAGC 0 ! Osborne, T.F. et al. (1987) PNAS USA 84, 3614-3618 HMR 0 WTTTATRTTTW 0 ! HNF-1_RS 0 CTGTGAAATATTAACTAAA 0 ! Baumhueter et.al. (88) EMBO J 7.8: 2485 HNF-1_RS 0 GTTAATNATTAAT 0 ! HNFI-|Fib 0 AACAAACTGTCAAATATTAACTAAAGGGAG 0 ! Courtois et.al. (87) Science 238: 685 HO/-411 0 ATGTTATTATTTACAT 0 ! Ko et.al. (88) Cell 55: 135 HSE 0 CTNGAANNCTTNAG 0 ! Parker & Topol (84) Cell 33: 357 HSE-hsp70 0 CTGGAATATTCCCG 0 ! Wu et.al. (87) PNAS 84: 2203 HSTF-hsp70.1 0 AAATAAAGAATATTCTAGAATCCC 0 ! Topol, J. et al. (1985) Cell 42, 527-537 HSTF-hsp70.4 0 CTCGAATGTTCGCGAAAA 0 ! Parker, C.S. and Topol, J. (1984) Cell 37, 273-283 HSTF-hsp70.6 0 CTCGTTGCTTCGAG 0 ! Shuey, D.J. and Parker, C.S. (1986) J. Biol. Chem. 261, 7934-7940 HSTF-hsp70.8 0 CTCGAATGTTCGCG 0 ! Shuey, D.J. and Parker, C.S. (1986) J. Biol. Chem. 261, 7934-7940 HSTF-hsp70.9 0 GACCTTATAAGGGC 0 ! Morgan, W.D. et al. (1987) Mol. Cell. Biol. 7, 1129-1138 HSV.tk.2 0 GGGCGG 0 ! McKnight, S.L., et al. Cell 37: 253-262 (1984) HSV/AT 0 GWATCYCATTANCATRC 0 ! Roizman et.al. (84) In Transfer and Expression.... HSVIE 0 TAATGARAT 0 ! Preston et.al. (84) J Virol 50: 708 HSVIE.1 0 CGTCCCGGTC 0 ! Whitton, J.L., Clements, J.B. J. Gen. Virol. 65: 451-466 (1984) HSVori_CS2 0 CGTTCGCACTT 0 ! HSVtk 0 ATTGGCGAAT 0 ! McKnight et.al. (85) Euk Trans: (abs) HS_prom3 0 RCMGGCGC 0 ! Pelham, H.R.B. Cell 30: 517-528 (1982) HTLV-pA-BS.1 0 ACCCTGCTT 0 ! Levinger, L.F. and Lautenberger, J.A. (1987) Eur. J. Biochem. 166, 519 HVRP-1 0 GGGNGGA 0 ! Tolun, A., et al. Cell 17: 705-713 (1979) HVRP4 0 GCCAA 0 ! Tolun, A., et al. Cell 17: 705-713 (1979) HVRP6 0 TGACGT 0 ! Tolun, A., et al. Cell 17: 705-713 (1979) HiNF-Ahist 0 AGAAATG 0 ! van Wijnen, A.J., et.al. (87) NAR 15: 1679 ICP4_RS 0 ATCGTCNNNNYCGRC 0 ! Faber, S.W., Wilcox, K.W. Nucl. Acids Res. 14: 6067-6083 (1986) ICS 0 AGTTTCTCCTCT 0 ! Shirayoshi et.al. (88) PNAS 85: 5884 ICS-FacB 0 AGTTTCTGTTTC 0 ! Shirayoshi et.al. (88) PNAS 85: 5884 ICS-H2Kb 0 AGTTTCACTTCT 0 ! Shirayoshi et.al. (88) PNAS 85: 5884 ICS-HLAA3 0 AGTTTCTTTTCT 0 ! Shirayoshi et.al. (88) PNAS 85: 5884 ICS-ISG54 0 AGTTTCACTTTC 0 ! Shirayoshi et.al. (88) PNAS 85: 5884 ICS-b2m 0 AGTTTCATGTTC 0 ! Shirayoshi et.al. (88) PNAS 85: 5884 ICS-os 0 GGTTTCGTTTCC 0 ! Shirayoshi et.al. (88) PNAS 85: 5884 ICS_core 0 AGTTTCACTTC 0 ! Appella & Ozato (88) JCB s12D: o598 IE1-I 0 CCCGCCTGGCTGACCGCCCAACGAC 0 ! Ghazal, P. et al. (1987) PNAS USA 84, 3658-3662 IE1-II 0 CCCCGCCCATTGACGTCAA 0 ! Ghazal, P. et al. (1987) PNAS USA 84, 3658-3662 IE1-IV 0 CTTTCCATTGACGTCAATGGGTAACGCCAAT 0 ! Ghazal, P. et al. (1987) PNAS USA 84, 3658-3662 IE1-IX 0 ATGCGGTTTTGGCAGTACATCAATGGG 0 ! Ghazal, P. et al. (1987) PNAS USA 84, 3658-3662 IE1-VI 0 CCCCCTATTGACGTCAATGACG 0 ! Ghazal, P. et al. (1987) PNAS USA 84, 3658-3662 IE1.1 0 TTGGCAGTACATC 0 ! Ghazal, P. et al. (1987) PNAS USA 84, 3658-3662 IEF1_RS 0 GCCATCTG 0 ! Ohlsson et.al. (88) PNAS 85: 4228 IL2/Bsite 0 TAATATGTAAAACATTTT 0 ! IL2R|-kB 0 GGGGAATCTCCC 0 ! Ballard et.al. (88) Science 241: 1652 IL2_CS 0 ASAAASGAGGAAAAACTG 0 ! Fujita et.al. (86) Cell 46: 401 INF.1 0 AAGTGA 0 ! Fujita, T., et al. Cell 49: 357-367 (1987) INS_US.1 0 TTTCTGCAGACTTAGC 0 ! 86161694 IR 0 TTATCCAAAACCTCGGTTTACAGGAAAC 0 ! ISRE 0 YAGTTCWYTTTYCC 0 ! ITF-b-IFN 0 GAGAAGTGAAAGTGG 0 ! 86218074 ITRN63.O 0 CGCCACGTCA 0 ! Leza & Hearing (88) J Virol 62.8: 3003 Ig-dc.2 0 TNATTTGCAT 0 ! Falkner, F.G., Zachau, H.G. Nature 310: 71-74 (1984) Ig-kappa.1 0 GGGGACTTTCC 0 ! Sen, R., Baltimore, D. Cell 46: 705-716 (1986) Ig-kappa.2 0 ATTTGCAT 0 ! Hromas, R., Van Ness, B. Nucl. Acids Res. 14: 4837-4848 (1986) IgH.1 0 CTCATGA 0 ! Landolfi, N.F., et al. Nucl. Acids Res. 16: 5503-5514 (1988) IgHC.1 0 ATTTGCAT 0 ! Ballard and Bothwell (1986) PNAS 83: 9626 IgHC.11 0 GTGTTTTGCTCA 0 ! Bohmann et.al. (1987) Nature 325: 268 IgHC.13 0 ATGCAAATAG 0 ! Bohmann et.al. (1987) Nature 325: 268-272 IgHC.15 0 ATTTGCAT 0 ! Augerau and Chambon (1986) EMBO J 5: 1791 IgHC.16 0 ATTTGCAT 0 ! Sive and Roeder (1986) PNAS 83: 6382 IgHC.17 0 TTTTAGGAAGCAAAAACA 0 ! Maeda et.al. (1987) NAR 15: 2851 IgHC.19 0 ATGAAAAT 0 ! Maeda et.al. (1987) NAR 15: 2851 IgHC1 0 AGGAAGCA 0 ! Augerau & Chambon (86) EMBO J 5.8: 1791 IgHC3 0 CCACCA 0 ! Augerau & Chambon (86) EMBO J 5.8: 1791 IgHN1 0 GCAGGTCATGTGGCAAGG 0 ! Augerau & Chambon (86) EMBO J 5.8: 1791 IgHN3 0 TGAAACACT 0 ! Augerau & Chambon (86) EMBO J 5.8: 1791 IgHN5 0 TGGGTAATTTGCATTTCTA 0 ! Augerau & Chambon (86) EMBO J 5.8: 1791 IgHuE1 0 GGCCATCTTG 0 ! Johnson et.al. (87) Genes Dev 1: 132 IgHuE3 0 TGCCACATGA 0 ! Johnson et.al. (87) Genes Dev 1: 132 IgLC2 0 GGTGGTTTGGCTTTCAGG 0 ! Augerau & Chambon (86) EMBO J 5.8: 1791 IgLC4 0 TTATTCAACT 0 ! Augerau & Chambon (86) EMBO J 5.8: 1791 IgLN2 0 GGGGAAGGGAAAATAAAACC 0 ! Augerau & Chambon (86) EMBO J 5.8: 1791 IgLN4 0 GAAAGTCCAGGC 0 ! Augerau & Chambon (86) EMBO J 5.8: 1791 IgNF-A-IgH 0 ATGCAAAT 0 ! Singh et.al. (86) Nature 319: 154 IgNF-A-Igk 0 ATTTGCAT 0 ! Sive and Roeder (1986) PNAS 83: 6382 IgPE-1-IgH 0 CAGCTGGCAGGAAGCAGGTCATGTGGCAAGG 0 ! Schlokat et.al. (86) EMBO J 5: 3251-8 IgPE-1-MSV 0 ATATGGGCCAAACAGGATATCTGTGGTAAGC 0 ! 87004545 IgPE-1-Py 0 CAAGGTCCCTCCAGAGGGACGTGTGGTTTTG 0 ! 87133485 IgPE-2-LPVmut4 0 ACTGAAAGAGGAAGCTGTGGTTAGACTCG 0 ! 87133485 IgPE2_RS 0 CCACCAAACCGAAAGTCCAGG 0 ! Schlokat et.al. (86) EMBO J 5: 1791 Ig_E3 0 AGGTCATGTGGCAAC 0 ! Ig_cd 0 ATGCAAATNA 0 ! Falkner & Zachau (87) Nature 310: 77 Ig_dc 0 TGATTTGCAT 0 ! Falkner & Zachau (87) Nature 310: 77 JCVprom.1 0 GGGNGGRR 0 ! Martin, J.D., et al. J. Virol. 53: 306-311 (1985) KAPPA 0 GGGGGACTTTCC 0 ! Sen & Baltimore (86) Cell 46: 705 KBF1-MHCI 0 GGGGATTCCCCAT 0 ! 88111518 Keratin_pr 0 TTTGGCTT 0 ! LEXA.1 0 NNCTGWTNNNNNNNCAGNN 0 ! Little, J.W., Mount, D.W. Cell 29: 11-22 (1982) LF-A1_RS 0 TGRMCC 0 ! Mardon et.al. (88) EMBO J 7.6: 1711 LFA2_RS 0 CTCCGATAACTG 0 ! Monaci et.al. (88) EMBO J 7.7: 2075 LFB2_RS 0 GGGTGACCTTGGTTAATATT 0 ! Monaci et.al. (85) EMBO J 7.7: 2075 LSF-SV40 0 CCGCCC 0 ! 87317587 LVa-Mo-MuL 0 GAACAG 0 ! 87172777 LVb-Mo-MuL 0 CAGGATA 0 ! 87172777 LVb_RS 0 CAGGATA 0 ! Speck & Baltimore (88) MCB 7.3: 1101 LVc-Mo-MuL 0 CCTGC 0 ! 87172777 Lam_B2_US 0 CCCKCCCWCCT 0 ! Ogawa et.al. (88) JBC 263.17: 8384 LysHREII 0 TTTATGTACAGGG 0 ! Hecht et.al. (88) EMBO J 7.7: 2063 LysHREIV 0 CCCAGTTTGTACAGTTCTGGCACTTTTT 0 ! Hecht et.al. (88) EMBO J 7.7: 2063 LysHREVI 0 GCCTGACCGTCCC 0 ! Hecht et.al. (88) EMBO J 7.7: 2063 MAT-OCTA1 0 ATGCAAAT 0 ! Ko et.al. (88) Cell 55: 135 MAT_gene.2 0 TCRTGTNNWNANNTACATCA 0 ! Miller, A.M., et al. Nature 314: 598-603 (1985) MAT|1 0 ATGTAGAAAAGTACAT 0 ! Ko et.al. (88) Cell 55: 135 MAT|2_CS1 0 ATGTAATT 0 ! Ko et.al. (88) Cell 55: 135 MEL1 0 ATTCGGCCATATGTCTTCCGAAA 0 ! Bram et.al. (86) EMBO J 5: 603 MFa1.1 0 GTGTAATT 0 ! Ko et.al. (88) Cell 55: 135 MFa2.1 0 ATGTATTT 0 ! Ko et.al. (88) Cell 55: 135 MHCI/H2K 0 GGGATTCCCCAT 0 ! 87204189 MHCI/H2K.2 0 GGGATTCCCCAT 0 ! 87204189 MHCIIA.2 0 CCCAGCGAGTGATG 0 ! MHCIIB.2 0 CCCATTGGTT 0 ! MHCIIpromA 0 YAGNWAACAGATGA 0 ! MHCIIpromB 0 CTGATTGG 0 ! MHC_HLA_DQ| 0 ATTTGTAT 0 ! Miwa, K., Strominger, J.L. Nucl. Acids Res. 15: 8057-8067 (1987) MHC_HLA_H.2 0 GGAAGTGA 0 ! Kimura, A., et al. Cell 44: 261-272 (1986) MHCemb 0 GTGTCAGTCA 0 ! MLC1/3F-DR 0 AASSCCTCTCCC 0 ! Shirakata et.al. (88) MCB 8.6: 2580 MLTF/UEF/U 0 CGTGAC 0 ! Osborne, T.F. et al. (1987) PNAS USA 84, 3614-3618 MMTV-NF-I_RS 0 AAAACCTTAAATAGGTTTAGAA 0 ! 87102873 MRE.1 0 CYTTTGCRYYCG 0 ! Stuart, G.W., et al. Proc. Natl. Acad. Sci. USA 81: 7318-7322 (1984) MRE.3 0 ACCCGGTACACTGTGTCCTCCCGCT 0 ! Karin, M., et al. Nature 308: 513-519 (1984) MRE.5 0 TGCGCCCGCYC 0 ! Carter, A.D., et al. Proc. Natl. Acad. Sci. USA 81: 7392-7396 (1984) MRE_CS1 0 TGCRCYCG 0 ! Palmiter et.al. (85) Euk Trans: (abs) MRE_CS2 0 STGCGCCCGGCC 0 ! MRE_CS4 0 YKCGCCCGGCYC 0 ! MRE_CS5 0 NTTTGGRCNCGGCYC 0 ! Zafarullah et.al. (88) MCB 8.10: 4469 MREd 0 CTCTGCACTCCGCCCGA 0 ! Seguin & Hamer (87) Science 235: 1383 MT-I.2 0 TGCACACCG 0 ! 88065495 MT-I.3 0 TGCGTCGG 0 ! 88065495 MT-I.4 0 TGCGTCGT 0 ! 88065495 MT-I.5 0 CTGAGTGCA 0 ! 88065495 MT-I.6 0 TGCGCCCGG 0 ! 88065495 MT-IIA-BLE-1 0 GCCGCAAGTGACTTCTAGCG 0 ! 87115798 MT/G-box 0 GSGGGSCGKGTGCA 0 ! Mueller et.al. (88) Genes Dev 2: 412 MTVGRE_NRS 0 AGGATGT 0 ! Langer & Ostrowski et.al. (88) MCB 8.9: 3872 Mo-MuLV 0 TGTGGTAT 0 ! 87172777 NF-A2-IgHc 0 ATTTGCAT 0 ! Staudt, L.M. et al. (1986) Nature, 323, 640-643 NF-A2-IgkL 0 ATTTGCAT 0 ! Staudt et.al. (1986) Nature 323: 640 NF-E1.1 0 TGCTAATCAT 0 ! Wall et.al. (88) Genes Dev 2: 1089 NF-E1.4 0 TTATCTC 0 ! Wall et.al. (88) Genes Dev 2: 1089 NF-E1.6 0 TATCTC 0 ! Wall et.al. (88) Genes Dev 2: 1089 NF-E1.8 0 CCAATCT 0 ! Wall et.al. (88) Genes Dev 2: 1089 NF-E1.9 0 AAGTATCACT 0 ! Wall et.al. (88) Genes Dev 2: 1089 NF-GMa 0 GAGATTCCAC 0 ! Shannon et.al. (88) JCB s12D: o774 (abs) NF-Y*-tk 0 CCAAT 0 ! 87301730 NF-Y-MHCII 0 ATTGG 0 ! 87317630 NFBK.2 0 GGGAATGCAGCCAAA 0 ! Markowitz & Dynan (88) J Virol 62.9: 3388 NFBK.4 0 TGGAAACTGGCCAAA 0 ! Markowitz & Dynan (88) J Virol 62.9: 3388 NFBK.6 0 TGAAACCATGCCAAA 0 ! Markowitz & Dynan (88) J Virol 62.9: 3388 NFBK_CS 0 TGGAAWSYWGCCAAA 0 ! Markowitz & Dynan (88) J Virol 62.9: 3388 NFI-IE1.1 0 TGGCACATGGCCAA 0 ! Hennighausen, L. and Fleckenstein, B. (1986) EMBO J. 5, 1367-1371 NFI-IE1.3 0 TTGGCTATTGGCCA 0 ! Hennighausen, L. and Fleckenstein, B. (1986) EMBO J. 5, 1367-1371 NFI-MMTV 0 TTGGAATCTATCCAA 0 ! 85215598 NFI-Mo-Mu 0 CGGCTCAGGGCCA 0 ! 87172777 NFI-Mo-MuLV? 0 TGAATATGGGCCA 0 ! 87172777 NFI-albumin 0 TTTTTGGCAAGGAT 0 ! Cereghini, S. et al. (1987) Cell 50, 627-638 NFI-cmycII1 0 TGGAAGGCAGCCAA 0 ! Siebenlist et.al. (84) Cell 37 : 381 NFI-tkII 0 ACCCCGCCCA 0 ! Jones et.al. (85) Cell 42: 559 NFI.10 0 TGGCACTGGGCCAA 0 ! Hennighausen et.al. (85) Nature 314: 285 NFI.12 0 TGGCTAATGGCCAA 0 ! Hennighausen & Fleckenstein (86) EMBO J 5: 1367 NFI.14 0 TGGACATGAGCCAA 0 ! Henninghausen & Fleckenstein (86) EMBO J 5: 1367 NFI.16 0 TTGGATTGAAGCCAAT 0 ! DeVries et.al. (85) NAR 13.13: 4935 NFI.17 0 ATTTTGGATTGAAGCCAATATGA 0 ! Wides et.al. (87) MCB 7.2: 864 NFI.3 0 TGGATTGAAGCCAA 0 ! Nagata et.al. (83) PNAS 80: 6177 NFI.5 0 TGGCTTTGGGCCAA 0 ! Gronostayski et.al. (85) MCB 5: 964 NFI.7 0 TGGCACTATGCCAC 0 ! Gronostayski et.al. (85) MCB 5: 964 NFI.9 0 TGGCAAGCTGTCAA 0 ! Gronostayski et.al. (85) MCB 5: 964 NFIII-Ad12 0 AATATTAAAATGAAG 0 ! Pruijn et.al. (88) J Virol 62.9: 3092 NFIII-Ad4 0 AATATGCAAATAAGG 0 ! Pruijn et.al. (88) J Virol 62.9: 3092 NFIII-Ad41 0 AATATGATAATGAGT 0 ! Pruijn et.al. (88) J Virol 62.9: 3092 NFI_CS2 0 TGGNNNNNNNGCCA 0 ! NFI_CS3 0 TGGNNNNNNGCCA 0 ! Leegwater et.al. (86) EMBO J 5: 381 NFI_CS4 0 TGGCTNNNAGCCAA 0 ! NFI_CS5 0 TCGNNNNNGCCAA 0 ! Hatamochi, A. et al. (1986) J. Biol. Chem. 261, 11310-11314 NFix.2 0 CTGGNNNNNNNNTTGCANNNNNNNNNY 0 ! Beynon, J., et al. Cell 34: 665-671 (1983) NFix.4 0 CTGGYARRNNNNTTGCA 0 ! Ausubel, F.M. Cell 37: 5-6 (1984) NFkB-HIV 0 GGGGACTTTCC 0 ! Leung & Nabel (88) Nature 333: 776 NFkB-HIgk 0 GGGGGATTTCC 0 ! Leung & Nabel (88) Nature 333: 776 NFkB-IL2Ra 0 GGGGAATCTCC 0 ! Leung & Nabel (88) Nature 333: 776 NFkB.1 0 CAGAGGGAGTTTCCGAGAGC 0 ! NFkB.2 0 ATGGGTTTCCTA 0 ! NFkB_CS1 0 GGGGACTTTCC 0 ! NFkE2 0 GTCCCATGATGGTTA 0 ! NFuE1-IgHC 0 AGTCAAGATGGCCGATC 0 ! Sen, R. and Baltimore, D. (1986) Cell 46, 705-716 NFuE3/GTII 0 GTCATGTGGCAAG 0 ! Sen and Baltimore (1986) Cell 46: 705 NRCI 0 AATTCCTCTGAATAGAGAGAGGAC 0 ! Nod_box 0 ATCCAAACAATCRATTTTACCAATC 0 ! OBF-SV40.1 0 TGCTTTGCAT 0 ! 87115775 OBF-SV40.2 0 TGTTTGCAT 0 ! 87115775 OBF-U2snRN 0 ATGCAAATAG 0 ! 87115775 OBF-histone 0 ATTTGCAT 0 ! Barberis, A. et al. (1987) Cell 50, 347-359 OCTA1.1 0 ATTTGCAT 0 ! Singh et.al. (86) Nature 379: 154 OCTA1.3 0 ATTTGCAT 0 ! OCTA2.1 0 CAGGTGGC 0 ! Ephrussi et.al. (85) Science 227: 134 OR1 0 TTTTACCTCTGGCGGTGATAAT 0 ! Tullius & Dombroski (86) PNAS 83: 5469 Octa-facto 0 ATGCAAAT 0 ! 87259982 Octa1.4 0 ATGCAAAG 0 ! Sturm et.al. (87) Genes Dev 1: 1147 Oval_prom 0 GTGTCAAAGCTTC 0 ! PAL 0 TTCCTAATTAGGAA 0 ! Passmore et.al. (88) JCB s12D: o750 (abs) PE 0 RGTTARTNNTYNNC 0 ! PE-a 0 ACTGACCGC 0 ! Piette & Yaniv (87) EMBO J 6: 1332 PEA-2-poly 0 ACTAACTGACCGCAGCTGGCC 0 ! 87275827 PEA1_RS 0 TGACTAA 0 ! Martin et.al. (88) pnas 85: 5839 PEA2-polyo 0 ACTGACCGC 0 ! 87258255 PEA3_RS 0 AGGAAG 0 ! Martin et.al. (88) PNAS 85: 5839 PEB1-polyo 0 GACATCCTCTTTTAATTAGTTG 0 ! 86030249 PE_EF-C 0 AGTTGC 0 ! PR-lysozym 0 ATTCCTCTGT 0 ! 86206046 PR-lysozym.2-2 0 GTTTTTGACAACTGTAGAACAGAGGAA 0 ! 85137874 PR-uterogl.1 0 TGTTCTCC 0 ! 87231032 PR-uterogl.2 0 AGTCCTTT 0 ! 87231032 PR-uterogl.3 0 TGTTCACT 0 ! 87231032 PR-uterogl.4 0 TAGAACCCGTGCTCTT 0 ! 87231032 PR-uterogl.5 0 TGTTCACT 0 ! 87231032 PR-uterogl.6 0 TGTCCTCT 0 ! 87133483 PRDII 0 GTGGGAAATTCC 0 ! PRL_prom 0 CCTGAWWA 0 ! PRTF-MFa1 0 TTTCCGATTAGGAAT 0 ! 87301711 PRTF/MATa1.1 0 TTTCCTAATTAGTCCTATCAATAGAAC 0 ! 87301711 PRTF/MATa1.2 0 CTTCCTAATTAGGCCATTCAACGACAG 0 ! 87301711 PRTF/MATa1.3 0 TTTCTTCATTGGTACATTCAATGCCAG 0 ! 87301711 PRTF/MATa1.4 0 TTTCCTAATTAGTGTCACAATGACAG 0 ! 87301711 PUF-1-prol 0 TGATTATATATATATTCA 0 ! 87260958 PUT2_UAS.2 0 GAAGCCGA 0 ! Siddiqui and Brandriss (88) MCB 8.11: 4 634 PUT2_UAS1 0 GAATGCCAA 0 ! Siddiqui and Brandriss (88) MCB 8.11: 4634 Py-alpha.1 0 TGACTAACT 0 ! 87275827 R/Prolac_I 0 GCTGAAATTAATCAAAA 0 ! R/Prolac_II 0 TCCTTCTTTCTG 0 ! RC2-CYC1.1 0 GCCGGGGTTTA 0 ! Pfeifer, K. et al. (1987) Cell 49, 9-18 RC2-CYC1.2 0 GATGACC 0 ! Pfeifer, K. et al. (1987) Cell 49, 9-18 RSVEFII_RS 0 TCTTATGCAATACTCTTGTA 0 ! RSVEFI__RS 0 ACCGTGCATGCCGATTGGTG 0 ! Rev_CAAT 0 ATTGG 0 ! S1_HS 0 TCCTCCTCC 0 ! Johnson et.al. (88) MCB 8.10: 4174 SBF-BHMR 0 TAAATATAAAA 0 ! Shore, D. et al. (1987) EMBO J. 6, 461-467 SCMVIE 0 ACGGTAAATGGCCC 0 ! SCR-indf 0 CAGTTCCCGTCAATG 0 ! Hayes, T.E. et al. (1987) PNAS USA 84, 1272-1276 SP-A 0 CAATTCCTCCTCCTGC 0 ! De-Medina et.al. (88) MCB 8.6: 2449 SP-C 0 GGCAGTCA 0 ! De-Medina et.al. (88) MCB 8.6: 2449 SP-D 0 CCTCTAAGAGACAG 0 ! De-Medina et.al. (88) MCB 8.6: 2449 SP1-IE3/1 0 GGGGCGGGGG 0 ! Kadonaga et.al. (86) TIBS 11: 20 SP1-MTIIA 0 GGGGCGGGGC 0 ! Kadonaga et.al. (86) TIBS 11: 20 SP1-SV/1 0 GGGGCGGAGA 0 ! Kadonaga et.al. (86) TIBS 11: 20 SP1-SV/4 0 GGGGCGGGAT 0 ! Kadonaga et.al. (86) TIBS 11: 20 SP1-SV3/5 0 TGGGCGGAGT 0 ! Kadonaga et.al. (86) TIBS 11: 20 SP1-TK/2 0 TGGGCGGGGT 0 ! Kadonaga et.al. (86) TIBS 11: 20 SP1?-U2snR.3 0 GGGCGG 0 ! 87259982 SP1_CS2 0 GGGCGG 0 ! Briggs et.al. (86) Science 234: 47 SRE.1 0 ATCYYATTWTCTGKTTGTA 0 ! Tata (82) Nature 298: 707 STE2.1 0 ATGTACTT 0 ! Ko et.al. (88) Cell 55: 135 STE6.1 0 ATGTAATT 0 ! Ko et.al. (88) Cell 55: 135 SUP-DIS.1 0 GGCGGG 0 ! Levanon, D., et al. EMBO J. 4: 77-84 (1985) SV40-SPHII 0 AAGTATGCAAAG 0 ! SV40-core 0 GTGGWWWGGTCCCCA 0 ! Weiher et.al. (83) Science 219: 626 SV40.1 0 TCTCAATTAGT 0 ! 87115775 SV40.10 0 CCAGGCTCCCC 0 ! 87064501 SV40.11 0 CCCAG 0 ! 87014825 SV40.12 0 ACTTTCCACACC 0 ! 88056262 SV40.13 0 TGGAAAG 0 ! 87159552 SV40.14 0 ACATTCCACAGC 0 ! 87014825 SV40.15 0 ACATTCCACAGC 0 ! 87014825 SV40.2 0 TGCATGCTTTGCATACTT 0 ! 87014825 SV40.3 0 TGTGGAAAGTCCCCAGGCTCCCCAGCAG 0 ! 87115775 SV40.4 0 CCAGGCTCCCC 0 ! 87064501 SV40.5 0 ACTTTCCACACC 0 ! 87014825 SV40.6 0 TGGAAAG 0 ! 87159552 SV40.7 0 TGACTAATTGA 0 ! 87115775 SV40.8 0 TGCATGCTTTGCATACTT 0 ! 87174814 SV40.9 0 TGTGGAAAGTCCCCAGGCTCCCCAGCAG 0 ! 87115775 SV40.late.1 0 GGTACCTAACC 0 ! Brady, J., et al. Cell 31: 625-633 (1982) SV40_P 0 ACTGATTAACT 0 ! Sal_box 0 AGGTCGACCAGKK 0 ! Grumm et.al. (88) JCB s12D: o010 (abs) Sindbis.kdi.25 0 ATTTTGTTTTTAACATTTC 0 ! Levis, R., et al. Cell 44: 137-145 (1986) Slp/FPII 0 CTGCAATTGCACAAGG 0 ! Loreni et.al. (88) MCB 8.6: 2350 Slp/FPIII 0 CACAAGGGGAAACT 0 ! Loreni et.al. (88) MCB 8.6: 2350 Slp/FPIIIb 0 TTTGTGGTTGGCCCCAG 0 ! Loreni et.al. (88) MCB 8.6: 2350 Somatostat 0 TGACGTCA 0 ! Andersen et.al. (88) JCB s12D: o105 (abs) Sp1-DHFR.2 0 GGGGCGGAGC 0 ! Dynan, W.S. et al. (1986) Nature 319, 246-248 Sp1-HIV-1.2 0 TGGGCGGGAC 0 ! Jones, K.A. et al. (1986) Science 232, 755-759 Sp1-IE-3.1 0 CCGCCC 0 ! Jones, K.A. and Tjian, R. (1985) Nature 317, 179-182 Sp1-IE-3.3 0 CCCGCC 0 ! Jones, K.A. and Tjian, R. (1985) Nature 317, 179-182 Sp1-IE-3.5 0 CCGCCC 0 ! Jones, K.A. and Tjian, R. (1985) Nature 317, 179-182 Sp1-IE-4/5 0 CCGCCC 0 ! Jones, K.A. and Tjian, R. (1985) Nature 317, 179-182 Sp1-MT-I.1 0 GAGCTCTGCACTCCGCCCGAAAAGTGC 0 ! Seguin & Hamer (87) Science 235: 1383 Sp1-SV40.1 0 GGGGCGGG 0 ! 85061571 Sp1-SV40.2 0 GGGCGGAG 0 ! 86018849 Sp1-SV40.3 0 GGGCGGAG 0 ! 85061571 Sp1-SV40.4 0 GGGCGG 0 ! 85061571 Sp1-hsp70 0 GGCGGG 0 ! Greene, J.M. et al. (1987) Mol Cell. Biol. 7, 3646-3655 Sp1-ras 0 GCCCCGCCCCGCCCCGCCCC 0 ! 86235432 Sp1-ras1.1 0 GCTCCGCCTC 0 ! 86235432 Sp1-ras1.2 0 GCCCCGCCCG 0 ! 86235432 Sp1-ras1.3 0 GGGGCGGGGC 0 ! 86235432 Sp1-ras1.4 0 GGGGGCGGGC 0 ! 86235432 Sp1-ras1.5 0 CCCCCGCCCC 0 ! 86235432 Sp1-tk.1 0 ACCCCGCCCA 0 ! 85282613 Sp1-tk.2 0 GGGGCGGCGC 0 ! 85282613 Sp1/CRF-EII 0 CGGGCGGGATTGG 0 ! Goding, C.R. et al. (1987) NAR 15, 7761-7780 Sp1?-MT-I.1 0 GGGGGCGG 0 ! 88065495 Sp1?-MT-I.2 0 TGCACTCCGCCC 0 ! 88065495 Sp1?-U2snR.1 0 GGGCGG 0 ! 87259982 Sp1?-U2snR.2 0 ACGCCC 0 ! 87259982 Syn.1 0 NGGGCAAAT 0 ! Elango, N., et al. J. Virol. 55: 101-110 (1985) T-Ag-Py.1 0 CTCTCCACCCAGGCC 0 ! 85033939 T-Ag-Py.2 0 CAACAGCTGTTTTTTTTAGTATTAAGCAG 0 ! 85033939 T-Ag-Py.3 0 GGCCGGGGGCCCCT 0 ! 85033939 T-Ag-SV40-I 0 GCCTAGGCCTCCAAAAAAGCCTC 0 ! 83138977 T-Ag-SV40-II 0 GAGGCCGAGGCGGCCTCGGCCTC 0 ! 83138977 T-Ag-SV40.1 0 TAGGC 0 ! 83138977 T-Ag-SV40.2 0 GAGGC 0 ! 83138977 T-Ag-SV40.3 0 GGGGC 0 ! 83138977 T-Ag-SV40.4 0 TGGGC 0 ! 83138977 TAB-hsp83 0 TATAAAAGCAGACGC 0 ! Wu, C. (1984) Nature 309, 229-234 TAT-distal-GRE 0 CTGTACAGGATGTTC 0 ! 87159544 TAT-prox-GRE 0 TAGAACAAACAAGTCC 0 ! 87159544 TATA 0 TATAAA 0 ! TATA 0 TATAAT 0 ! TATAbox 0 TATAAA 0 ! Buchner & Trifonov (86) NAR 14.24: 10009 TCRb_prom 0 AGTGAYRTCA 0 ! TEF1-GTI* 0 TGGAAAGTC 0 ! Davidson et.al. (88) Cell 54: 931 TEF1-PyEC9 0 TGGAATGTT 0 ! Davidson et.al. (88) Cell 54: 931 TEF1-SphII 0 AAGTATGCA 0 ! Davidson et.al. (88) Cell 54: 931 TFIID/TBF?-RS 0 TATAAA 0 ! Wu, B.J. et al. (1987) PNAS USA 84, 2203-2207 TK.1 0 CCCCGCCC 0 ! McKnight, S.L., Kingsbury, R. Science 217: 316-324 (1982) TRE 0 TCAGGTCATGACCTGA 0 ! Beato (89) Cell 56: 335 TUF-RP/RP5.1 0 AACATCCGTGCA 0 ! 86135993 TUF-RP/RP5.2 0 TACCTCCGTACA 0 ! 87275840 TUF-RP/S33 0 ACACCCATACAT 0 ! 87275840 TUF_CS 0 ACCCATACATYW 0 ! 87275840 TUF_RS 0 ACACCCATACAT 0 ! 87275840 TfCR 0 GTGCTGGACTCCTTCCACTCGCGG 0 ! Brunel et.al. (88) JBC 263.21: 10180 TfPRII 0 GGGCGATTGGGCAACCCGGC 0 ! Brunel et.al. (88) JBC 263.21 TyBF_RS 0 GTCATCATAGACG 0 ! Goel & Perlman (88) MCB 8.6: 2572 U1BsnRNA 0 ATGCAAATGAGGG 0 ! 87259982 U2snRNA.1 0 STGCAAAT 0 ! 87259982 U2snRNA.2 0 GTGCC 0 ! 87115775 U5snRNA 0 ATTTGCAT 0 ! 88082680 U5snRNA.2 0 GGTGCGCGCCGGT 0 ! 88082680 UAS-PGK_RS 0 GAAATTACCGTCGCTCGTGATTTGTTTG 0 ! 88015532 UAS1.2 0 GATGACGA 0 ! Pfeifer et.al. (87) Cell 49: 9 UAS1.3 0 TGGCCGGGGTTTACGGACGATGA 0 ! Pfeifer et.al. (87) Cell 49: 9 UAS1A 0 TTTCACCGATCTTTCC 0 ! Cerdan & Zitoner (88) MCB 8.6: 2275 UAS1B 0 TCATCGTCCGTAAACCCCGGCCA 0 ! Cerdan & Zitoner (88) MCB 8.6: 2275 UASUP1 0 TGATTGGT 0 ! Lichtsteiner et.al. (87) Cell 51: 953 UASg 0 CGGAAGACTCTCCTCCG 0 ! Ma & Ptashne (87) Cell 48: 847 UASt 0 TCGTTTTGTACGTTTTTCA 0 ! Hanil et.al. (88) MCB 8.10: 4328 UBP1_RS 0 CTCTCTGG 0 ! Wu et.al. (88) EMBO J 7.7: 2117 UCE.1 0 GTCCGT 0 ! Bell et.al. (88) Science 241: 1192 UCE.3 0 GTCCGTGTCGNNNNNNNNNTGGGCCG 0 ! Bell et.al. (88) Science 241: 1192 URA.2 0 CCGRTATTCTT 0 ! Losson, R., et al. J. Mol. Biol. 185: 65-81 (1985) URS2 0 CACGAAAA 0 ! Breeden & Nasmyth (87) Cell 48: 389 VP5_Prom 0 AGGGCCATCTTGAA 0 ! WAP.1 0 TTTAAAAATGGCCTCCAT 0 ! 87174739 WAP.5 0 CCAAGT 0 ! 87174739 WAP.6 0 TTTAAA 0 ! 87174739 XRE-cyt450.1 0 CSTSYTSTCACGCWA 0 ! Fujisawa-Sehara, A., et al. Nucl. Acids Res. 15: 4179-4191 (1987) XRE-cyt450.3 0 AGTGTATTCT 0 ! Sogawa, K., et al. J. Biol. Chem. 260: 5026-5032 (1985) XRE-cyt450.5 0 AGTGGG 0 ! Sogawa, K., et al. J. Biol. Chem. 260: 5026-5032 (1985) XRE2 0 CGGTCCCAGTGCTGTCACGCTAGCT 0 ! Fujisawa-Sehara et.al. (88) PNAS 85: 5859 XRE_CS2 0 GNNSMNGNNCNTNTNCCGCWA 0 ! Fujisawa-Sehara et.al. (88) PNAS 85: 5859 XY_CS.1 0 CCTAGMRACWGATG 0 ! Dorn et.al. (88) MCB 8.10: 3975 a-actin_US 0 GTCGCC 0 ! Walsh, K. and Schimmel, P. (1987) J. Biol. Chem. 262: 9429-9432 aD-globin-B 0 AAGATAAGG 0 ! Kemper et.al. (87) MCB 7: 2059 aD-globin-US 0 GTGCGGATAAGATAAGGCCG 0 ! Kemper et.al. (87) MCB 7: 2059 actin-cyto 0 AAGATGCGGATATTGGCGAT 0 ! Mohun, T. et al. (1987) EMBO J. 6, 667-673 adip-P2_US1 0 AACATGACTCAGAGGAA 0 ! Distel, R.J. et al (1987) Cell 49, 835-844 alpha-4_RS1 0 GGGGAATCGTCACTGCCGCCCCTTTG 0 ! Kristie, T.M. and Roizman, B. (1986) PNAS USA 83, 4700-4704 amy_US1 0 CCAGTCAATASGTCTGC 0 ! Boer, P.H., Hickey, D.A. Nucl. Acids Res. 14: 8399-8411 (1986) arg-op.1 0 WATGAATAWTNATNCANT 0 ! Cunin, R., et al. Nucl. Acids Res. 11: 5007-5019 (1983) b-globin 0 CCACACCCG 0 ! Jones, K.A. et al (1987) Cell 48, 79-89 b/e_E2 0 AGTCTTGATAGCAAAA 0 ! Evans et.al. (88) PNAS 85: 5976 bA-globin 0 CCAAT 0 ! Emerson et.al. (85) Cell 41: 21 bA-globin 0 GGGGCGGG 0 ! Emerson et.al. (85) Cell 41: 21 bh_P1 0 AGGAAAGATAGCAAAT 0 ! Evans et.al. (88) PNAS 85: 5976 c-fos.1 0 GATGTCCATATTAGGACATC 0 ! Gilman, M.Z. et al. (1986) Mol. Cell. Biol. 6, 4305-4316 c-fos.3 0 AGAGGGCCTTGGGGCGCTTA 0 ! Gilman, M.Z. et al. (1986) Mol. Cell. Biol. 6, 4305-4316 c-fos_SRE 0 GATGTCCATATTAGGACATC 0 ! Greenberg, M.E. et al. (1987) Mol. Cell Biol. 7, 1217-1225 c-fos_US5 0 GTGACGT 0 ! 88065485 c-mos_DS1 0 TGGTTTG 0 ! 87254206 c-mos_DS2 0 CAACCAC 0 ! 87254206 c-mos_DS3 0 GTTTTAA 0 ! 87254206 cAMP_RE 0 TGACGTCA 0 ! Lewis et.al. (87) PNAS 84: 3550 cfosSRE 0 GATGTCC 0 ! cfosSRE.2 0 GATGTCCATATTAGGACAT 0 ! conalb_US1 0 GGAAA 0 ! Maroteaux, L., et al. Nucl. Acids Res. 11: 1227-1243 (1983) copia_prom.seq1 0 CTNNAANANTNNNG 0 ! Strand, D.J., McDonald, J.F. Nucl. Acids Res. 13: 4401-4410 (1985) copia_prom.seq2 0 NTGGAATATNCTRN 0 ! Strand, D.J., McDonald, J.F. Nucl. Acids Res. 13: 4401-4410 (1985) cytomeg18 0 MCTAACGGGACTTTCCAA 0 ! cytomeg19 0 CCCCATTGACGTCAATGGG 0 ! dJRA-hmtIIA 0 TGACTCA 0 ! Biggin & Tjian (89) TIGS dc_box 0 TSATTTGCAT 0 ! dc_box.2 0 TNATTTGCAT 0 ! en_RS 0 TCAATTATTAT 0 ! engrailed_RS 0 TCAATTAAAT 0 ! Biggin & Tjian (89) TIGS in press es_RS 0 TCAGCACCG 0 ! eve 0 TCAATTAAAT 0 ! Hoey et.al. (88) MCB 8.11: 4598 eve_RS1 0 TAATAATAATAATAA 0 ! Biggin & Tjian (89) TIGS in press ftz-Ubx 0 TCAATTAAAT 0 ! Biggin & Tjian TIGS in press gln-ALG.2 0 GCACYATATTGGTGC 0 ! Reitzer, L.J., Magasanik, B. Cell 45: 785-792 (1986) glob.1 0 GGGGGGGGGGGGGGGGGGCGGGTGG 0 ! Plumb, M.A., et al. Nucl. Acids Res. 13: 4047-4065 (1986) hist.1 0 CCAAT 0 ! Wells, D. Nucl. Acids Res. 14: r119-r121 (1986) hist.H0_gene 0 RNNYCACGA 0 ! Nasmyth, K. Cell 42: 225-235 (1985) hist.H1_gene 0 AAACACA 0 ! Wells, D. Nucl. Acids Res. 14: r119-r121 (1986) hist.H4.1 0 GTCAGGTCC 0 ! Clerc, R.G., et al. Nucl. Acids Res. 11: 8641-8657 (1983) hist.gene.3 0 TATAA 0 ! Wells, D. Nucl. Acids Res. 14: r119-r121 (1986) hmtIIa 0 AGTACACTTTGT 0 ! Karin et.al. (84) Nature 308: 513 hsp70 0 GAAGGGAAAA 0 ! Greene, J.M. et al. (1987) Mol Cell. Biol. 7, 3646-3655 hsp70.6 0 ATTGG 0 ! Greene, J.M. et al. (1987) Mol Cell. Biol. 7, 3646-3655 insulin 0 GTGGAAA 0 ! Ohlsson and Edlund (1986) Cell 45: 35 lambda.d 0 GGTGTGTG 0 ! Friedman, D.I., Gottesman, M. legumin_US1 0 TCCATAGCCATGCAWRCTGMAGAATGTC 0 ! Baumlein, H., et al. Nucl. Acids Res. 14: 2707-2720 (1986) lys.2 0 ANNNNTGGCWNNNYGYCM 0 ! Borgmeyer, U., et al. Nucl. Acids Res. 12: 4295-4311 (1984) mal_US 0 GGAKGA 0 ! Raibaud, O., et al. J. Bact. 161: 1201-1208 (1985) mal_gene.1 0 TCMTCC 0 ! Raibaud, O., et al. J. Bact. 161: 1201-1208 (1985) mitoch.term1 0 ATTCTTA 0 ! Thalenfeld, B.E., et al. J. Biol. Chem. 258: 14065-14068 (1983) nGRE.1 0 CCTTTTAGAAAGGACAAAACAGAATG 0 ! Sakai et.al. (88) Genes Dev 2: 1144 nGRE.3 0 TAAAATACTCTTTGATAATACAT 0 ! Sakai et.al. (88) Genes Dev 2: 1144 nGRE.5 0 CCAGATCTCACCATCATTAT 0 ! Sakai et.al. (88) Genes Dev 2: 1144 nGRE.7 0 GGCAAAAGGGAATGCCTGATTAAATA 0 ! Sakai et.al. (88) Genes Dev 2: 1144 nGRE.8 0 GTTGGCAGAGAACATTGC 0 ! Guertin et.al. (88) MCB 8: 1398 nif_seq 0 TGTNNNNNNNNNNACA 0 ! Alvarez-Morales, A., et al. Nucl. Acids Res. 14: 4207-4227 (1986) nodulin-23 0 GTTTCCCT 0 ! Mauro, V.P., et al. Nucl. Acids Res. 13: 239-249 (1985) nus.a 0 YGCTCTT 0 ! Olson, E.R., et al. J. Mol. Biol. 180: 1053-1063 (1984) oct-B1A-SV 0 CTTTGCAT 0 ! 88082673 oct-B1B-SV 0 CTTTGCAT 0 ! 88082673 oct-B2-SV4 0 CTTGCAT 0 ! 88082673 oct-B3-SV4 0 CTTTGCAT 0 ! 88082673 pGHF1 0 CCATGCATAAATGTACACAG 0 ! paired_RS1 0 TCAATTAAAT 0 ! Biggin & Tjian (89) TIGS in press polII_term 0 ATCRAAWTAGWAAKAGCAAT 0 ! Frayne & Kellans (86) NAR 14.10: 4113 polyoma.1 0 AGAGG 0 ! 87117522 polyoma.2 0 AGTTGCTAGGCAACT 0 ! 86176771 polyoma.3 0 ACTGCCCTCCAGAGGGCAGT 0 ! 86176771 polyoma.4 0 ACTGCCCTCCAGAGGGCAGT 0 ! 86030249 qa-1F-qa-1.1 0 GGATGAGTGATTCTCC 0 ! 87172795 qa-1F-qa-1.2 0 GGATAAACAATTATCC 0 ! 87172795 qa-1F-qa-2.1 0 GGATGAGTTTTTAACC 0 ! 87172795 qa-1F-qa-2.2 0 GGATAAATCCTAACCC 0 ! 87172795 qa-1F-qa-2.3 0 GGGTAATCGCTTATCC 0 ! 87172795 qa-1F-qa-3.1 0 GGGTAAGTATTTAAGC 0 ! 87172795 qa-1F-qa-3.2 0 GGCAAAACGCTCATCC 0 ! 87172795 qa-1F-qa-3.3 0 GGGGAATAACTTATAG 0 ! 87172795 qa-1F-qa-4.1 0 GGCTAAGTGTTTAACA 0 ! 87172795 qa-1F-qa-4.2 0 CGTTAATGCTTTATTC 0 ! 87172795 qa-1F-qa-y.1 0 GGGTAATGGCTTTTCC 0 ! 87172795 qa-1F-qa-y.2 0 GGTTATACATTCATCC 0 ! 87172795 qa-1F-qa-y.3 0 GGCTCAACACTCATCA 0 ! 87172795 rPRL-FPI 0 CCTGATTATATATATATTCA 0 ! 87069954 rPRL-FPII 0 GATGTTTAAAAT 0 ! 87260958 rPRL-FPIII 0 CCTGAAAATGAATAAGAAA 0 ! 87260958 rPRL-FPIV 0 GCTGTAATTA 0 ! 87260958 rPrl.A 0 CTGATTA 0 ! Schuster et.al. (88) EMBO J 7.6: 1721 rRNA_seq1 0 AGGTCGACCAGTANTCCG 0 ! Grummt, I., et al. Cell 45: 837-846 (1986) rib.term.1 0 YRTCTG 0 ! Brosius, J., et al. J. Mol. Biol. 148: 107-127 (1981) ribINTRONS.1 0 ACCCATACATTT 0 ! Leer, R.J., et al. Nucl. Acids Res. 13: 701-709 (1985) rib_US.2 0 AGGTCGACCAGATNTCCG 0 ! Grummt, I., et al. Cell 45: 837-846 (1986) thyroglob.1 0 CCCAGTCAAGTGTTC 0 ! Musti, A.M., et al. Nucl. Acids Res. 15: 8149-8166 (1987) topoII_CS 0 GTNWAYATTNATNNR 0 ! uvrC_SOS.1 0 CTGNCAG 0 ! Sharma, S. et al. Nucl. Acids Res. 14: 2301-2318 (1986) vaccinia 0 TATTACTGAATTAATA 0 ! 87317596 vaccinia.1 0 CTATTC 0 ! Venkatesan, S., et al. Cell 25: 805-813 (1981) vit-estr.1 0 GGWGYKGAAAG 0 ! Jost, J.-P., et al. Proc. Natl. Acad. Sci. USA 81: 429-433 (1984) vitA2.1 0 GGTCANTGACC 0 ! Peale, F.V., et al. Proc. Nat. Acad. Sci. USA 85: 1038-1042 (1988) vitell.1 0 CACGGGATCAATGTGTTCTT 0 ! 87016908 x-boxpb-MH 0 CCTAGCAACAGATG 0 ! 87317630 yeast.term.2 0 TTTTTATA 0 ! Henikoff, S. et al. Cell 33: 607-614 (1983) yeast.term.3 0 TATGT 0 ! Zaret, K.S., Sherman, F. Cell 28: 563-573 (1982) zen_RS1 0 TCAATTAAAT 0 ! Biggin & Tjian (89) TIGS in press zeste-Ubx 0 CGAGCG 0 ! Biggin & Tjian (89) TIGS in press |-INF.2 0 AARKGA 0 ! Fujita, et al. Cell 41: 489-496 (1985) |-globin 0 GATAAG 0 ! |-tub_US1 0 TTCTCTGGG 0 ! Hall, J.L., Cowan, N.Y. Nucl. Acids Res. 13: 207-223 (1985) |1AT-Hapt 0 TGGACACAGG 0 ! DeSimone et.al. (87) EMBO J 6: 2759 |1AT-RBP 0 CTGAGCCAGG 0 ! DeSimone et.al. (87) EMBO J 6: 2759 |2.BAR1 0 AATTACCGAAAAAGGAAATT 0 ! Johnson & Herskowitz (85) Cell 42: 237 |2.MFa1 0 AATTACCCAAAAAGGAAATT 0 ! Johnson & Herskowitz (85) Cell 42: 237 |2.STE6.2 0 TCGAGCGTGTAAATTTCC 0 ! Johnson & Herskowitz (85) Cell 42: 237 |2_CS 0 AATTACCNAATAAGGAAATT 0 ! Sauer et.al. (88) Genes Dev 2: 807 |A_E2 0 GTGGCTGATAAAGAGC 0 ! Evans et.al. (88) PNAS 85: 5976 |GLOBIN 0 CCACACCC 0 ! Myers et.al. (86) Science 232: 613 |TIF 0 TAATGARAT 0 ! |_P 0 CAAGGAGATAAGGGTC 0 ! Evans et.al. (88) PNAS 85: 5976 |pol_RS 0 GTGACGTCAC 0 ! Widen et.al. (88) JBC 263.32: 16992