The Ribonuclease P Database

New Information & Release Notes


New information

12/15/95
Nucleic Acids Research Database issue manuscript on the RNase P Database.
The reference for this paper is Brown, J.W. 1996 The Ribonuclease P Database. Nucl. Acids Res. 24:236-238.

12/15/95
New archaeal RNase P RNA sequences and structures.
From Elizabeth Haas, David Armbruster, Beverly Vucson, Charles Daniels, and James Brown (submitted to Nucleic Acids Research); Genbank accession numbers U42980-U42983, U42985-U42988.

12/15/95
Methanosarcina barkeri RNase P RNA sequence and structure.
From David Armbruster and Charles Daniels, The Ohio State University (unpublished data) Genbank accession number U42984.

11/16/95
Cyanophora paradoxa cyanelle RNase P RNA sequence and structure.
From the complete cyanelle sequence ( Stirewalt,V.L., et al., unpublished data); the accession number of the complete sequence is U30821; the rnpB gene is located at nucleotides 41268 to 41619.

11/16/95
Coxiella burnetii RNase P protein (rnpA) sequence.
From Suhan,M., et al., J. Bacteriol. 176, 5233-5243 (1994), GenBank accession number U10529.

11/2/95
Mycoplasma genitalium RNase P RNA and protein sequences.
From the complete genome sequence (Fraser,C.M., et al. Science 270, 397-403 (1995)); the accession number of the complete sequence is L43967; the rnpA gene is located at nucleotides 569912 to 569529, and the rnpB gene is located from nucleotides 406518 to 406136.

10/4/95
Borrelia burgdorferi partial RNase P protein (rnpA) sequence.
Genbank ccession number Z12166 (Saint Girons,I., et al., Microbiol. 140, 1803-1816 (1994)).

10/4/95
Streptomyces coelicolor RNase P protein (rnpA) sequence.
From Calcutt,M.J. and Schmidt,F.J. J. Bacteriol. 174, 3220-3226 (1992) - accession number M82836.

10/2/95
Mycoplasma capricola RNase P protein (rnpA) sequence.
Unpublished (as far as I know) from Miyate, et al. - taken from GenBank accession number D14982.

10/2/95
Pseudomonas putida RNase P protein (rnpA) sequence.
From Ogasawara, et al., (1992) Mol. Microbiol. 6:629-634, accession number P25752.

10/1/95
Haemophilus influenzae RNase P RNA and protein sequences.
From the complete genome sequence (Fleischmann,R.D., et al. Science 269, 496-512 (1995)); the accession number of the genome sequences is L10328; the rnpA gene is located at nucleotides 1063346 to 1063753 and the rnpB gene is located from 1746237 to 1745841.

10/1/95
Mycobacterium leprae RNase P protein (rnpA) sequence.
From the unpublished data of De Rossi,E., Cantoni,R., Labo',M. and Riccardi,G., accession number L39923.

7/26/95
Comparison of P4 in RNase P RNA and domain V of group II introns
Images of figure 7 from Harris, M.E. and Pace, N.R, 1995, Identification of phosphates involved in catalysis by the ribozyme RNase P RNA. RNA 1:210-218.

7/26/95
Streptomyces lividans RNase P RNA sequence & structure.
Sequence (with a couple of presumed corrections) taken from Shareck, F., Beily, P., Morosoli, R, and Kluepfel, D. 1995 Gene 153:105-109.

7/26/95
Primordial soup!
By popular demand, the GIF file of the Primordial soup label by Jim Brown.


Corrections

6/18/95
The Electric Monk sequences (EM14b-9 and EM14b-11) are from the outflow of Octopus Spring (Yellowstone National Park, WY, USA). They are not 'volunteer' sequences as labeled in the secondary structures.

6/22/95
The Genbank accession numbers of some of the natural pupulations sequences have been changed. Below is a listing of the corrected accession numbers:

7/26/95
The reference for the T. thermophilus sequence is Hartmann & Erdmann instead of Hartmann et al.


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