Ribonuclease P RNAs
Bacterial RNase P RNAs
Purple bacteria and relatives
alpha sub-division
- Rhodospirillum rubrum (M59355 Brown, et al., 1991, J. Bacteriol. 173:3855)
- Agrobacterium tumefaciens (M59354 Brown, et al., 1991, J. Bacteriol. 173:3855)
- PS#1 (U28109 Brown, et al, PNAS, in press)
- PS#2 (U28103 Brown, et al, PNAS, in press)
- PS#6 (U28095 Brown, et al, PNAS, in press)
- PS#24 (U28106 Brown, et al, PNAS, in press)
- PS#26 (U28105 Brown, et al, PNAS, in press)
- PS#27 (U28110 Brown, et al, PNAS, in press)
- PS#31 (U28107 Brown, et al, PNAS, in press)
- LGB#23 (U28117 Brown, et al, PNAS, in press)
- LGB#41 (U28081 Brown, et al, PNAS, in press)
- LGW#113 (U28086 Brown, et al, PNAS, in press)
- ESH212C (U28102 Brown, et al, PNAS, in press)
beta sub-division
- Alcaligenes eutrophus (M59353 Brown, et al., 1991, J. Bacteriol. 173:3855)
- Thiobacillus ferrooxidans (X16580 Takeshima, et al, 1989, Nucl. Acids Res. 17:9482)
- Pseudomonas testosteroni (Brown, Haas, and Pace, unpublished data)
- Mxa1 (Brown, et al, PNAS, in press)
- ESH26-4 (U28129 Brown, et al, PNAS, in press)
- ESH167F (U28097 Brown, et al, PNAS, in press)
- ESH183D (U28098 Brown, et al, PNAS, in press)
gamma subdivision
- Escherichia coli (M17569 Reed, et al, 1982, Cell 30:627)
- Salmonella typhimurium (M10889 Baer, et al, 1985, Science 228:999)
- Klebsiella pneumoniae (M32719 Lawrence, et al, 1987, PNAS 84:6825)
- Erwinia agglomerulans (M33657 Lawrence, et al, 1987, PNAS 84:6825)
- Serratia marcescens (M33658 Lawrence, et al, 1987, PNAS 84:6825)
- Pseudomonas fluorescens (M19024 James, et al, 1988, Cell 52:19)
- Chromatium vinosum (M59356 Brown, et al., 1991, J. Bacteriol.173:3855)
- ESH7-9 (U28125 Brown, et al, PNAS, in press)
- ESH7-16 (U28123 Brown, et al, PNAS, in press)
- ESH17b-7 (U28126 Brown, et al, PNAS, in press)
- ESH20b-4 (U28124 Brown, et al, PNAS, in press)
- ESH21b-4 (U28090 Brown, et al, PNAS, in press)
- BH#145 (U28122 Brown, et al, PNAS, in press)
- P#126 (U28121 Brown, et al, PNAS, in press)
- P#131 (U28089 Brown, et al, PNAS, in press)
- LGW#23 (U28084 Brown, et al, PNAS, in press)
delta sub-division
Purple Bacteria of unclear affiliation
- ESH7-4 (U28094 Brown, et al, PNAS, in press)
- ESH46a-1 (U28093 Brown, et al, PNAS, in press)
- PS#22 (U28100 Brown, et al, PNAS, in press)
- PS#33 (U28111 Brown, et al, PNAS, in press)
- LGA#2 (U28113 Brown, et al, PNAS, in press)
- LGW#17 (U28082 Brown, et al, PNAS, in press)
Cyanobacteria
- Anacystis nidulans PCC6301 (X63566 Banta, et al, 1992, Nucl. Acids Res. 20:911)
- Anabaena sp. PCC 7120 (X65648 Vioque, 1992, NAR 20:6331-6337)
- Calothrix sp. PCC7601 (X65649 Vioque, 1992, NAR 20:6331-6337)
- Synechocystis sp. PCC6803 (X65707 Vioque, 1992, NAR 20:6331-6337)
- Pseudoanabaena sp. PCC 6903 (X73135 Vioque, in press)
- Synechococcus sp. PCC7942 (Vioque, unpublished data) *
- Cyanophora paradoxa (Bryant, unpublished data) *
- Synechocystis sp. PCC6308 (Vioque, unpublished data) *
- Fischerella sp. UTEX1829 (Vioque, unpublished data) *
- Nostoc sp. PCC7107 (Vioque, unpublished data) *
- Nostoc sp. PCC6705 (Vioque, unpublished data) *
- Anabaena sp. ATCC29413 (Vioque, unpublished data) *
- PS#4 (U28099 Brown, et al, PNAS, in press)
- ESH183A (U28098 Brown, et al, PNAS, in press)
Green Sulfur Bacteria
Planctomycetes
- Pirellula staleyi (Haas, Brown, and Pace, unpublished data) *
- Planctomyces maris (Haas, Brown, and Pace, unpublished data) *
- LGA#6 (U28095 Brown, et al, PNAS, in press)
- LGA#8 (U28104 Brown, et al, PNAS, in press)
- LGW#46 (U28085 Brown, et al, PNAS, in press)
- LGW#116 (U28087 Brown, et al, PNAS, in press)
Gram positive Bacteria
High G+C subdivision
- Streptomyces bikiniensis (M64290 Haas, et al, 1991, Science 254:853)
- Micrococcus luteus (Haas, Banta, and Brown, unpublished data) *
- ESH210B (U28101 Brown, et al, PNAS, in press)
Low G+C subdivision
- Bacillus brevis (M19023 James, et al, 1988, Cell 52:19)
- Bacillus stearothermophilus (M19021 James, et al, 1988, Cell 52:19)
- Bacillus subtilis (M13175 Reich, et al, 1986, J. Biol. Chem. 261:7888)
- Bacillus megaterium (M19022 James, et al, 1988, Cell 52:19)
- Mycoplasma hyopneumoniae (X69982 Kirsebom, et al, 1994, Mol. Microbiol.)
- Mycoplasma flocculara (X69983 Kirsebom, et al, 1994, Mol. Microbiol.)
- Mycoplasma fermentans (Banta, Haas, Brown and Pace, unpublished data) *
- Staphylococcus aureus (Haas and Brown, unpublished data) *
- Heliobacillus mobilis (Haas and Brown, unpublished data) *
- Eubacterium thermomarinus (Haas and Brown, unpublished data) *
- Clostridium sporogenes (Haas and Brown, unpublished data) *
- Lactobacillus acidophilus (Haas and Brown, unpublished data) *
- Streptococcus faecalis (Haas and Brown, unpublished data) *
- Streptococcus faciem (Haas and Brown, unpublished data) *
- Acholeplasma laidlawii (Haas and Brown, unpublished data) *
Bacteriodes and relatives
- Bacteroides thetaiotaomicron (L25702 Haas, et al, 1994, PNAS 91:2527)
- Flavobacterium yabuuchiae (L25705 Haas, et al, 1994, PNAS 91:2527)
- ESH30-3 (U28092 Brown, et al, PNAS, in press)
- ESH167E (U28096 Brown, et al, PNAS, in press)
- PS#8 (U28104 Brown, et al, PNAS, in press)
- LGA#1 (U28108 Brown, et al, PNAS, in press)
- LGB#27 (U28079 Brown, et al, PNAS, in press)
Chlamydia
- Chlamydia psittaci (Haas, Brown, and Pace, unpublished data) *
- Chlamydia trachomatis (Haas, Brown, and Pace, unpublished data) *
Spirochaetes
- Borellia burgdorferi (Z30593 Mattsson, et al, 1994, J. Mol. Biol. 241:1)
- Borellia hermsii (Haas, Brown, and Pace, unpublished data) *
- Leptospira borgpetersenii (Haas, Brown, and Pace, unpublished data) *
- Leptospira weilii (Haas, Brown, and Pace, unpublished data) *
Deinococci and relatives
Green non-sulfur Bacteria
- Thermomicrobium roseum (Haas and Brown, unpublished data) *
- Chloroflexus aurantiacus (Haas and Brown, unpublished data) *
- Herpetosiphon aurantiacus (Haas and Brown, unpublished data) *
- Thermoleophilum album (Haas and Brown, unpublished data) *
Thermotogales
Bacterial sequences of unknown affiliation
- ESH20b-1 (U28127 Brown, et al, PNAS, in press)
- PF#101 (U28120 Brown, et al, PNAS, in press)
- EM14b-9 (U28088 Brown, et al, PNAS, in press)
- EM14b-11 (U28119 Brown, et al, PNAS, in press)
- LGA#10 (U28118 Brown, et al, PNAS, in press)
- LGB#5 (U28115 Brown, et al, PNAS, in press)
- LGB#21 (U28116 Brown, et al, PNAS, in press)
- LGB#32 (U28080 Brown, et al, PNAS, in press)
- LGW#18 (U28083 Brown, et al, PNAS, in press)
- vHge3-5 (U28128 Brown, et al, PNAS, in press)
Archaeal RNase P RNAs:
Extreme halophiles
- Haloferax volcanii (M61003 Nieuwlandt, et al, 1991, J. Biol. Chem. 266:5689)
- Halococcus morrhuae (Haas, Armbruster, Daniels, and Brown, unpublished data) *
- Halobacterium trapanicum (Haas, Armbruster, Daniels, and Brown, unpublished data) *
- Halobacterium cutirubrum (Haas, Armbruster, Daniels, and Brown, unpublished data) *
- Natronobacterium gregoryi (Haas, Armbruster, Daniels, and Brown, unpublished data) *
Sulfur-dependent thermophiles
- Sulfolobus acidocaldarius (L13597 LaGrandeur, et al, 1993, J. Bact 175:5043)
- Thermococcus celer AL-1 (Haas and Brown, unpublished data) *
Methanogens
- Methanosarcina barkeri (Haas, Armbruster, Daniels, and Brown, unpublished data) *
- Methanobacterium thermoautotrophicum DeltaH (Haas and Brown, unpublished data) *
- Methanobacterium thermoautotrophicum Marburg (Haas and Brown, unpublished data) *
- Methanothermus fervidus (Haas and Brown, unpublished data) *
Mitochondrial RNase P RNAs:
- Saccharomyces cerevisiae MH41 (Morales, et al., 1989, NAR 17:6865-6881) *
- Saccharomyces cerevisiae D273 (Martin, unpublished data) *
- Saccharomycopsis fibuligera (M69219 Wise & Martin, 1991, JBC 266:19154-19157) *
- Saccharomyces exiguus (Martin, unpublished data) *
- Candida glabrata (X02168 Shu, et al., 1991, JBC 11:1662-1667) *
- Kluvermyces lactis (Wilson, et al., 1989, NAR 17:4485-4491) *
- Saccharomyces chevalieri (Martin, unpublished data) *
- Saccharomyces diastaticus (Martin, unpublished data) *
- Saccharomyces ellipsoideous (Martin, unpublished data) *
- Saccharomyces douglasii (Martin, unpublished data) *
- Kluvermyces thermotolerans (Martin, unpublished data) *
- Kluvermyces fragilis (Martin, unpublished data) *
Nuclear RNase P RNA:
- Homo sapiens (Baer, et al., 1990, NAR 18:97-103) *
- Xenopus laevis (X56558 Doria, et al., 1991, NAR 19:2315-2320) *
- Saccharomyces cerevisiae (Lee & Engelke, 1989, MCB 9:2536-2543) *
- Schizosaccharomyces pombe (Krupp, et al., 1986, EMBO J. 5:1697-1703) *
- Saccharomyces carlbergensis (L12746 Tranuch & Engelke, unpublished data *)
- Saccharomyces kluveri (Tranuch & Engelke, unpublished data) *
- Saccharomyces globosus (L12748 Tranuch & Engelke, unpublished data) *
- Schizosaccharomyces octosporus (X522531 Tranuch & Engelke, unpublished data) *
These bacterial and archaeal sequences are as yet unpublished and do not
appear in the database. Contact the person(s) cited for further information
on these sequences.
Eukaryal and mitochondrial sequences are not yet included in the RNase P Database.