Fetching SeqPup You can obtain this software via Internet, using anonymous ftp, gopher or http to the IUBio server at iubio.bio.indiana.edu. It is located in folder /molbio/seqpup. Versions are available for Macintosh, MS Windows, and various XWindows/Unix systems. Please check the Readme files at this archive for recent news. Remember to use binary FTP to fetch the .zip and .gz binary files. Internet resource locators for this software are Source code for this software is at You will need to fetch one of the program archive files for your computer system, its associated child app archive, and fetch the essential and optional items from the "all- systems" folder. For example, this would be all-systems/ SeqPup.help, SeqPup.prefs, tables/*, seqs/* plus one of these groups to match your computer system mac/ seqpup-mac-68k.hqx and seqpup-mac-apps.hqx mswin/ seqpup32.zip mswin/win16/seqpup16.zip and spapp1.zip unix/dec-alpha-osf/ SeqPup.gz and seqpup-apps.tar.gz unix/sgi-irix/ SeqPup.gz and seqpup-apps.tar.gz unix/sun-sol2-sparc/ SeqPup.gz and seqpup-apps.tar.gz unix/sun-sol2-i86/ SeqPup.gz and seqpup-apps.tar.gz unix/sun-sunos4-sparc/ SeqPup-sunos-mostat.gz and seqpup-apps.tar.gz The current software distribution comprises the following items. all-systems/ mac/ mswin-i86/ unix/ all-systems/ SeqPup.help - help file (RTF format) essential SeqPup-help.text - help file (plain text) optional SeqPup.prefs - preferences file (plain text) essential tables/ - data files used by SeqPup, essential codon.table dro.cod hum.cod renzyme.table color.table eco.cod rat.cod tob.cod appsrc/ - source to applications called by SeqPup, optional ChildApp.c captest.seq fastDNAml.doc cap.src/ clustalw.doc fastDNAml.infile cap2.doc clustalw.src/ fastdnaml.src/ seqs/ - test sequence files, optional 23+28SrRNA.gb captest.fasta fastdnaml.phylip 5srna.gb dros.ig testre.map6 blue.seq ecolac.seq testreseq.gcg mac: - Macintosh, files are in binhex format Readme seqpup-68k.hqx - SeqPup for Mac with Motorola 68000 processor seqpup-ppc.hqx - SeqPup for Mac with PowerPC processor seqpup-apps.hqx - child apps for mac, both 68k and PPC (fat binaries) mswin: - MS Windows, files are in ZIP archive binary format Readme seqpup32.zip - SeqPup and child apps for MS Windows, 32-bit code win16/seqpup16.zip - Seqpup for MS Windows, 16-bit code win16.spapp1.zip - child apps for for mswin unix: - Unix, files are in TAR, Gnu ZIP format dec-alpha-osf/ - DEC Alpha computer with OSF/1 Unix sgi-irix/ - Silicon Graphics Iris sun-sol2-i86/ - Sun Solaris 2 on Intel 80x86 processor sun-sunos4-sparc/ - Sun SunOS4 on SPARC processor (or Sol2) sun-sol2-sparc/ - Sun Solaris 2 on SPARC processor unix/dec-alpha-osf: Readme SeqPup.gz seqpup-apps.tar.gz unix/sgi-irix: Readme SeqPup.gz seqpup-apps.tar.gz unix/sun-sol2-i86: Readme SeqPup.gz seqpup-apps.tar.gz unix/sun-sol2-sparc: Readme SeqPup.gz seqpup-apps.tar.gz unix/sun-sunos4-sparc: Readme SeqPup-sunos-mostat.gz - Motif libraries are included (will run on SunOS 4 or Solaris 2 lacking Motif libraries) SeqPup-sunos-dyn.gz - Motif libraries are not included seqpup-apps.tar.gz - child apps for SPARC Note: At this writing (Jan'96), the systems Sun-SunOS4 and MS-Win3/16bit are not well supported by development software that I now use (which supports more current operating systems). These systems will continue to be supported, but due to time constrains on me, they now lag behind others in updates. Also, other operating systems will be supported depending on popularity and requests. Linux OS on Intel86 will be supported when I can get hardware incompatibilities with it and my home Intel PC straightened out. Let me know your favorite OS if not supported.