I'll send NSEQTOOL in a few seconds. It's a program by R. Schnobel for SUN 4 or
SPARCstations described in CABIOS 7 (1991), 341-346 for simultaneous display
of multiple sequence alignments and protein backbone structure.



NSEQTOOL(1)              USER COMMANDS                NSEQTOOL(1)



NAME
     nseqtool - is a colour browser for aligned sequences plus 3D
     view of a backbone.

AVAILABILITY
     nseqtool runs under UNIX on a SUN-4  or  SPARC  workstation.
     It is made available by typing prepare_proteins.

DESCRIPTION
     The display of a set of aligned sequences is combined with a
     stick  representation of a folded protein backbone. The user
     may select one protein out of the alignment whose sequential
     and structural views will get intimately coupled.
     The interactive graphical environment  provides  for  direct
     control  of  objects:  Picking  and  highlighting  residues,
     scrolling the sequence display, permuting the colour  group-
     ing, rotation and scaling are performed with a mouse click.

AUTHOR
     Raimund Schnobel and Arthur Lesk 1989, 1990.

EXAMPLE
     Here is a sample session with nseqtool.
     Suntools (Open a shell window)
     CR /home/schnobel/projects/align/files/cd4
     BRK 2rhe
     ATTACH 1
     QUIT
     (This will read the alignment from a file  supplied  by  the
     user  and the coordinates from BROOKHAVEN file 2RHE.BRK. The
     stick display is attached to the first sequence.)
     (Note that the upper-case commands should be  typed  in  the
     command  field near the bottom of the screen. Click the left
     mouse button to refresh the picture.)

INPUT FILE
     The coordinate file is in BROOKHAVEN format.   The  sequence
     file format looks like this:
     2RHE
     ESVLTQP-PSASGTPGQRVTISCTGSATDIGS----NSVIWYQQVPGKA
     PKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYYCAA
     WND-SLDEPGFGGGTKLTVLGQPK*
     KOL VL
     ESVLTQP-PSASGTPGQRVTISCTGTSSNIGS----ITVNWYQQLPGMA
     PKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYYCAS
     WNS-SDNSYVFGTGTKVTVLGQPKANPTVT
     LFPPSSEELQANKATLVCLI*
     NEW VL
     -SVLTQP-PSVSGAPGQRVTISCTGSSSNIGA---GNHVKWYQQLPGTA
     PKLLIF-------HNNARFSVSKSGSSATLAITGLQAEDEADYYCQS
     YDR---SLRVFGGGTKLTVLRQPKAAPSVTLFPPSSEELQANKAT*

RELATED PROGRAMS
     The program Cameleon by G.M. Morris, Oxford, has a rich  set
     of  features,  but  handles  only  two  proteins, and has no
     structure display.

RESTRICTIONS
     The upper limit of the number of sequences is  set  to  1000
     each  having  at  most  2000 residues. No side chains can be
     displayed.

DEVICES REQUIRED
     nseqtool requires a colour graphics screen with a mouse.  It
     is  implemented  on  SUN-4 and SPARC workstations under Sun-
     tools.